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    Results: 1 to 20 of 116

    1.

    Assessment of protein set coherence using functional annotations.

    Chagoyen M, Carazo JM, Pascual-Montano A.

    BMC Bioinformatics. 2008 Oct 20;9:444.PMID: 18937846 [PubMed - indexed for MEDLINE]Related articlesFree article

    2.

    AVID: an integrative framework for discovering functional relationships among proteins.

    Jiang T, Keating AE.

    BMC Bioinformatics. 2005 Jun 1;6:136.PMID: 15929793 [PubMed - indexed for MEDLINE]Related articlesFree article

    3.

    False positive reduction in protein-protein interaction predictions using gene ontology annotations.

    Mahdavi MA, Lin YH.

    BMC Bioinformatics. 2007 Jul 23;8:262.PMID: 17645798 [PubMed - indexed for MEDLINE]Related articlesFree article

    4.

    Functional centrality: detecting lethality of proteins in protein interaction networks.

    Tew KL, Li XL, Tan SH.

    Genome Inform. 2007;19:166-77.PMID: 18546514 [PubMed - indexed for MEDLINE]Related articlesFree article

    5.

    Filtering high-throughput protein-protein interaction data using a combination of genomic features.

    Patil A, Nakamura H.

    BMC Bioinformatics. 2005 Apr 18;6:100.PMID: 15833142 [PubMed - indexed for MEDLINE]Related articlesFree article

    6.

    A copula method for modeling directional dependence of genes.

    Kim JM, Jung YS, Sungur EA, Han KH, Park C, Sohn I.

    BMC Bioinformatics. 2008 May 1;9:225.PMID: 18447957 [PubMed - indexed for MEDLINE]Related articlesFree article

    7.

    Growing functional modules from a seed protein via integration of protein interaction and gene expression data.

    Maraziotis IA, Dimitrakopoulou K, Bezerianos A.

    BMC Bioinformatics. 2007 Oct 23;8:408.PMID: 17956603 [PubMed - indexed for MEDLINE]Related articlesFree article

    8.

    Comprehensive curation and analysis of global interaction networks in Saccharomyces cerevisiae.

    Reguly T, Breitkreutz A, Boucher L, Breitkreutz BJ, Hon GC, Myers CL, Parsons A, Friesen H, Oughtred R, Tong A, Stark C, Ho Y, Botstein D, Andrews B, Boone C, Troyanskya OG, Ideker T, Dolinski K, Batada NN, Tyers M.

    J Biol. 2006;5(4):11. Epub 2006 Jun 8.PMID: 16762047 [PubMed - indexed for MEDLINE]Related articlesFree article

    9.

    Evaluation of GO-based functional similarity measures using S. cerevisiae protein interaction and expression profile data.

    Xu T, Du L, Zhou Y.

    BMC Bioinformatics. 2008 Nov 6;9:472.PMID: 18986551 [PubMed - indexed for MEDLINE]Related articlesFree article

    10.

    Identification of functional modules in a PPI network by clique percolation clustering.

    Zhang S, Ning X, Zhang XS.

    Comput Biol Chem. 2006 Dec;30(6):445-51. Epub 2006 Nov 13.PMID: 17098476 [PubMed - indexed for MEDLINE]Related articles

    11.

    Combining functional and topological properties to identify core modules in protein interaction networks.

    Lubovac Z, Gamalielsson J, Olsson B.

    Proteins. 2006 Sep 1;64(4):948-59.PMID: 16794996 [PubMed - indexed for MEDLINE]Related articles

    12.

    Beyond synexpression relationships: local clustering of time-shifted and inverted gene expression profiles identifies new, biologically relevant interactions.

    Qian J, Dolled-Filhart M, Lin J, Yu H, Gerstein M.

    J Mol Biol. 2001 Dec 14;314(5):1053-66.PMID: 11743722 [PubMed - indexed for MEDLINE]Related articles

    13.

    Generating confidence intervals on biological networks.

    Thorne T, Stumpf MP.

    BMC Bioinformatics. 2007 Nov 30;8:467.PMID: 18053130 [PubMed - indexed for MEDLINE]Related articlesFree article

    14.

    Automatic extraction of gene ontology annotation and its correlation with clusters in protein networks.

    Daraselia N, Yuryev A, Egorov S, Mazo I, Ispolatov I.

    BMC Bioinformatics. 2007 Jul 10;8:243.PMID: 17620146 [PubMed - indexed for MEDLINE]Related articlesFree article

    15.

    Comprehensive analysis of co-occurring domain sets in yeast proteins.

    Cohen-Gihon I, Nussinov R, Sharan R.

    BMC Genomics. 2007 Jun 11;8:161.PMID: 17562021 [PubMed - indexed for MEDLINE]Related articlesFree article

    16.

    Struct2net: integrating structure into protein-protein interaction prediction.

    Singh R, Xu J, Berger B.

    Pac Symp Biocomput. 2006:403-14.PMID: 17094256 [PubMed - indexed for MEDLINE]Related articlesFree article

    17.

    Identification of functional modules using network topology and high-throughput data.

    Ulitsky I, Shamir R.

    BMC Syst Biol. 2007 Jan 26;1:8.PMID: 17408515 [PubMed - indexed for MEDLINE]Related articlesFree article

    18.

    Automatic detection of false annotations via binary property clustering.

    Kaplan N, Linial M.

    BMC Bioinformatics. 2005 Mar 8;6:46.PMID: 15755318 [PubMed - indexed for MEDLINE]Related articlesFree article

    19.

    Integration of GO annotations in Correspondence Analysis: facilitating the interpretation of microarray data.

    Busold CH, Winter S, Hauser N, Bauer A, Dippon J, Hoheisel JD, Fellenberg K.

    Bioinformatics. 2005 May 15;21(10):2424-9. Epub 2005 Mar 3.PMID: 15746280 [PubMed - indexed for MEDLINE]Related articlesFree article

    20.

    Discovering functional linkages and uncharacterized cellular pathways using phylogenetic profile comparisons: a comprehensive assessment.

    Jothi R, Przytycka TM, Aravind L.

    BMC Bioinformatics. 2007 May 23;8:173.PMID: 17521444 [PubMed - indexed for MEDLINE]Related articlesFree article

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