PubMed

Just how versatile are domains?

Weiner J 3rd, Moore AD, Bornberg-Bauer E.

BMC Evol Biol. 2008 Oct 14;8:285.PMID: 18854028 [PubMed - indexed for MEDLINE]Related articlesFree article

Evolutionary cores of domain co-occurrence networks.

Wuchty S, Almaas E.

BMC Evol Biol. 2005 Mar 23;5(1):24.PMID: 15788102 [PubMed - indexed for MEDLINE]Related articlesFree article

Evolution of protein domain promiscuity in eukaryotes.

Basu MK, Carmel L, Rogozin IB, Koonin EV.

Genome Res. 2008 Mar;18(3):449-61. Epub 2008 Jan 29.PMID: 18230802 [PubMed - indexed for MEDLINE]Related articlesFree article

The relationship between domain duplication and recombination.

Vogel C, Teichmann SA, Pereira-Leal J.

J Mol Biol. 2005 Feb 11;346(1):355-65. Epub 2004 Dec 23.PMID: 15663950 [PubMed - indexed for MEDLINE]Related articles

Supra-domains: evolutionary units larger than single protein domains.

Vogel C, Berzuini C, Bashton M, Gough J, Teichmann SA.

J Mol Biol. 2004 Feb 20;336(3):809-23.PMID: 15095989 [PubMed - indexed for MEDLINE]Related articles

Global phylogeny determined by the combination of protein domains in proteomes.

Wang M, Caetano-Anollés G.

Mol Biol Evol. 2006 Dec;23(12):2444-54. Epub 2006 Sep 13.PMID: 16971695 [PubMed - indexed for MEDLINE]Related articlesFree article

Comparative analysis of ribosomal proteins in complete genomes: an example of reductive evolution at the domain scale.

Lecompte O, Ripp R, Thierry JC, Moras D, Poch O.

Nucleic Acids Res. 2002 Dec 15;30(24):5382-90.PMID: 12490706 [PubMed - indexed for MEDLINE]Related articlesFree article

An insight into domain combinations.

Apic G, Gough J, Teichmann SA.

Bioinformatics. 2001;17 Suppl 1:S83-9.PMID: 11472996 [PubMed - indexed for MEDLINE]Related articlesFree article

Comparative pair-wise domain-combinations for screening the clade specific domain-architectures in metazoan genomes.

Kawashima S, Kawashima T, Putnam NH, Rokhsar DS, Wada H, Kanehisa M.

Genome Inform. 2007;19:50-60.PMID: 18546504 [PubMed - indexed for MEDLINE]Related articlesFree article

Analysis on multi-domain cooperation for predicting protein-protein interactions.

Wang RS, Wang Y, Wu LY, Zhang XS, Chen L.

BMC Bioinformatics. 2007 Oct 16;8:391.PMID: 17937822 [PubMed - indexed for MEDLINE]Related articlesFree article

Comprehensive analysis of co-occurring domain sets in yeast proteins.

Cohen-Gihon I, Nussinov R, Sharan R.

BMC Genomics. 2007 Jun 11;8:161.PMID: 17562021 [PubMed - indexed for MEDLINE]Related articlesFree article

The origins of modern proteomes.

Kurland CG, Canbäck B, Berg OG.

Biochimie. 2007 Dec;89(12):1454-63. Epub 2007 Sep 15.PMID: 17949885 [PubMed - indexed for MEDLINE]Related articles

Quantification of the elevated rate of domain rearrangements in metazoa.

Ekman D, Björklund AK, Elofsson A.

J Mol Biol. 2007 Oct 5;372(5):1337-48. Epub 2007 Jun 15.PMID: 17689563 [PubMed - indexed for MEDLINE]Related articles

Domain mobility in proteins: functional and evolutionary implications.

Basu MK, Poliakov E, Rogozin IB.

Brief Bioinform. 2009 May;10(3):205-16. Epub 2009 Jan 16.PMID: 19151098 [PubMed - indexed for MEDLINE]Related articles

Contact density affects protein evolutionary rate from bacteria to animals.

Zhou T, Drummond DA, Wilke CO.

J Mol Evol. 2008 Apr;66(4):395-404. Epub 2008 Apr 1.PMID: 18379715 [PubMed - indexed for MEDLINE]Related articles

Tracing the origin of functional and conserved domains in the human proteome: implications for protein evolution at the modular level.

Pal LR, Guda C.

BMC Evol Biol. 2006 Nov 7;6:91.PMID: 17090320 [PubMed - indexed for MEDLINE]Related articlesFree article

Evolution of protein families: is it possible to distinguish between domains of life?

Sales-Pardo M, Chan AO, Amaral LA, Guimerà R.

Gene. 2007 Nov 1;402(1-2):81-93. Epub 2007 Aug 14.PMID: 17826006 [PubMed - indexed for MEDLINE]Related articlesFree article

DAhunter: a web-based server that identifies homologous proteins by comparing domain architecture.

Lee B, Lee D.

Nucleic Acids Res. 2008 Jul 1;36(Web Server issue):W60-4. Epub 2008 Apr 14.PMID: 18411203 [PubMed - indexed for MEDLINE]Related articlesFree article

A model of globin evolution.

Vinogradov SN, Hoogewijs D, Bailly X, Mizuguchi K, Dewilde S, Moens L, Vanfleteren JR.

Gene. 2007 Aug 15;398(1-2):132-42. Epub 2007 May 4.PMID: 17540514 [PubMed - indexed for MEDLINE]Related articles

Long-term trends in evolution of indels in protein sequences.

Wolf Y, Madej T, Babenko V, Shoemaker B, Panchenko AR.

BMC Evol Biol. 2007 Feb 13;7:19.PMID: 17298668 [PubMed - indexed for MEDLINE]Related articlesFree article