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    Results: 1 to 20 of 40

    1.

    Structural segments and residue propensities in protein-RNA interfaces: Comparison with protein-protein and protein-DNA complexes.

    Biswas S, Guharoy M, Chakrabarti P.

    Bioinformation. 2008 Jul 14;2(10):422-7.PMID: 18841236 [PubMed - in process]Related articlesFree article

    2.

    Exploiting residue-level and profile-level interface propensities for usage in binding sites prediction of proteins.

    Dong Q, Wang X, Lin L, Guan Y.

    BMC Bioinformatics. 2007 May 5;8:147.PMID: 17480235 [PubMed - indexed for MEDLINE]Related articlesFree article

    3.

    Peptide segments in protein-protein interfaces.

    Pal A, Chakrabarti P, Bahadur R, Rodier F, Janin J.

    J Biosci. 2007 Jan;32(1):101-11. Erratum in: J Biosci. 2007 Jun;32(4):805. PMID: 17426384 [PubMed - indexed for MEDLINE]Related articlesFree article

    4.

    Investigations on C-H...pi interactions in RNA binding proteins.

    Anbarasu A, Anand S, Babu MM, Sethumadhavan R.

    Int J Biol Macromol. 2007 Aug 1;41(3):251-9. Epub 2007 Mar 7.PMID: 17420044 [PubMed - indexed for MEDLINE]Related articles

    5.

    Predicting interacting and interfacial residues using continuous sequence segments.

    Kundrotas P, Alexov E.

    Int J Biol Macromol. 2007 Dec 1;41(5):615-23. Epub 2007 Aug 9.PMID: 17850859 [PubMed - indexed for MEDLINE]Related articles

    6.

    Characterization of interfacial solvent in protein complexes and contribution of wet spots to the interface description.

    Teyra J, Pisabarro MT.

    Proteins. 2007 Jun 1;67(4):1087-95.PMID: 17397062 [PubMed - indexed for MEDLINE]Related articles

    7.

    Characterization of molecular recognition features, MoRFs, and their binding partners.

    Vacic V, Oldfield CJ, Mohan A, Radivojac P, Cortese MS, Uversky VN, Dunker AK.

    J Proteome Res. 2007 Jun;6(6):2351-66. Epub 2007 May 9.PMID: 17488107 [PubMed - indexed for MEDLINE]Related articlesFree article

    8.

    Protein-DNA interactions: structural, thermodynamic and clustering patterns of conserved residues in DNA-binding proteins.

    Ahmad S, Keskin O, Sarai A, Nussinov R.

    Nucleic Acids Res. 2008 Oct;36(18):5922-32. Epub 2008 Sep 18.PMID: 18801847 [PubMed - indexed for MEDLINE]Related articlesFree article

    9.

    Characterization of protein-protein interfaces.

    Yan C, Wu F, Jernigan RL, Dobbs D, Honavar V.

    Protein J. 2008 Jan;27(1):59-70.PMID: 17851740 [PubMed - indexed for MEDLINE]Related articlesFree article

    10.

    Geometric similarity between protein-RNA interfaces.

    Zhou P, Zou J, Tian F, Shang Z.

    J Comput Chem. 2009 Dec;30(16):2738-51.PMID: 19399760 [PubMed - in process]Related articles

    11.

    The interface of protein-protein complexes: analysis of contacts and prediction of interactions.

    Bahadur RP, Zacharias M.

    Cell Mol Life Sci. 2008 Apr;65(7-8):1059-72. Review.PMID: 18080088 [PubMed - indexed for MEDLINE]Related articles

    12.

    Taking advantage of local structure descriptors to analyze interresidue contacts in protein structures and protein complexes.

    Martin J, Regad L, Etchebest C, Camproux AC.

    Proteins. 2008 Nov 15;73(3):672-89.PMID: 18491388 [PubMed - indexed for MEDLINE]Related articles

    13.

    Dissecting protein-RNA recognition sites.

    Bahadur RP, Zacharias M, Janin J.

    Nucleic Acids Res. 2008 May;36(8):2705-16. Epub 2008 Mar 19.PMID: 18353859 [PubMed - indexed for MEDLINE]Related articlesFree article

    14.

    Insights into protein-DNA interactions through structure network analysis.

    Sathyapriya R, Vijayabaskar MS, Vishveshwara S.

    PLoS Comput Biol. 2008 Sep 5;4(9):e1000170.PMID: 18773096 [PubMed - indexed for MEDLINE]Related articlesFree article

    15.

    How proteins get in touch: interface prediction in the study of biomolecular complexes.

    de Vries SJ, Bonvin AM.

    Curr Protein Pept Sci. 2008 Aug;9(4):394-406.PMID: 18691126 [PubMed - indexed for MEDLINE]Related articles

    16.

    PPiClust: efficient clustering of 3D protein-protein interaction interfaces.

    Aung Z, Tan SH, Ng SK, Tan KL.

    J Bioinform Comput Biol. 2008 Jun;6(3):415-33.PMID: 18574857 [PubMed - indexed for MEDLINE]Related articles

    17.

    Characterization of putative hydrophobic substrate binding site residues of a Delta class glutathione transferase from Anopheles dirus.

    Lerksuthirat T, Ketterman AJ.

    Arch Biochem Biophys. 2008 Nov 1;479(1):97-103. Epub 2008 Aug 17.PMID: 18760991 [PubMed - indexed for MEDLINE]Related articles

    18.

    Structural basis of the role of the NikA ribbon-helix-helix domain in initiating bacterial conjugation.

    Yoshida H, Furuya N, Lin YJ, Güntert P, Komano T, Kainosho M.

    J Mol Biol. 2008 Dec 19;384(3):690-701. Epub 2008 Oct 7.PMID: 18929573 [PubMed - indexed for MEDLINE]Related articles

    19.

    Amino acid selective cross-saturation method for identification of proximal residue pairs in a protein-protein complex.

    Igarashi S, Osawa M, Takeuchi K, Ozawa S, Shimada I.

    J Am Chem Soc. 2008 Sep 10;130(36):12168-76. Epub 2008 Aug 16.PMID: 18707104 [PubMed - indexed for MEDLINE]Related articles

    20.

    [Structural behavior of RNA-binding proteins in free and complex states: ribosomal protein L25 and 5S RNA from Escherichia coli]

    Chigradze IuN.

    Mol Biol (Mosk). 2008 Jul-Aug;42(4):685-92. Russian. PMID: 18856069 [PubMed - indexed for MEDLINE]Related articles

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