PubMed

Comparable contributions of structural-functional constraints and expression level to the rate of protein sequence evolution.

Wolf MY, Wolf YI, Koonin EV.

Biol Direct. 2008 Oct 7;3:40.PMID: 18840284 [PubMed - indexed for MEDLINE]Related articlesFree article

Diversity and evolution of the thyroglobulin type-1 domain superfamily.

Novinec M, Kordis D, Turk V, Lenarcic B.

Mol Biol Evol. 2006 Apr;23(4):744-55. Epub 2005 Dec 20.PMID: 16368776 [PubMed - indexed for MEDLINE]Related articlesFree article

Contact density affects protein evolutionary rate from bacteria to animals.

Zhou T, Drummond DA, Wilke CO.

J Mol Evol. 2008 Apr;66(4):395-404. Epub 2008 Apr 1.PMID: 18379715 [PubMed - indexed for MEDLINE]Related articles

Eukaryotic protein domains as functional units of cellular evolution.

Jin J, Xie X, Chen C, Park JG, Stark C, James DA, Olhovsky M, Linding R, Mao Y, Pawson T.

Sci Signal. 2009 Nov 24;2(98):ra76.PMID: 19934434 [PubMed - indexed for MEDLINE]Related articles

Constant relative rate of protein evolution and detection of functional diversification among bacterial, archaeal and eukaryotic proteins.

Jordan IK, Kondrashov FA, Rogozin IB, Tatusov RL, Wolf YI, Koonin EV.

Genome Biol. 2001;2(12):RESEARCH0053. Epub 2001 Nov 20.PMID: 11790256 [PubMed - indexed for MEDLINE]Related articlesFree article

Why proteins evolve at different rates: the functional hypothesis versus the mistranslation-induced protein misfolding hypothesis.

Park D, Choi SS.

FEBS Lett. 2009 Apr 2;583(7):1053-9. Epub 2009 Feb 28. Review. Retraction in: FEBS Lett. 2009 Sep 17;583(18):3108. PMID: 19254718 [PubMed - indexed for MEDLINE]Related articles

Quantification of the elevated rate of domain rearrangements in metazoa.

Ekman D, Björklund AK, Elofsson A.

J Mol Biol. 2007 Oct 5;372(5):1337-48. Epub 2007 Jun 15.PMID: 17689563 [PubMed - indexed for MEDLINE]Related articles

Swaps in protein sequences.

Fliess A, Motro B, Unger R.

Proteins. 2002 Aug 1;48(2):377-87.PMID: 12112704 [PubMed - indexed for MEDLINE]Related articles

Regulatory potential, phyletic distribution and evolution of ancient, intracellular small-molecule-binding domains.

Anantharaman V, Koonin EV, Aravind L.

J Mol Biol. 2001 Apr 13;307(5):1271-92.PMID: 11292341 [PubMed - indexed for MEDLINE]Related articles

Why there is more to protein evolution than protein function: splicing, nucleosomes and dual-coding sequence.

Warnecke T, Weber CC, Hurst LD.

Biochem Soc Trans. 2009 Aug;37(Pt 4):756-61. Review.PMID: 19614589 [PubMed - indexed for MEDLINE]Related articles

Evolutionary systems biology: links between gene evolution and function.

Koonin EV, Wolf YI.

Curr Opin Biotechnol. 2006 Oct;17(5):481-7. Epub 2006 Sep 8. Review.PMID: 16962765 [PubMed - indexed for MEDLINE]Related articles

Expression patterns of protein kinases correlate with gene architecture and evolutionary rates.

Ogurtsov AY, Mariño-Ramírez L, Johnson GR, Landsman D, Shabalina SA, Spiridonov NA.

PLoS One. 2008;3(10):e3599. Epub 2008 Oct 31.PMID: 18974838 [PubMed - indexed for MEDLINE]Related articlesFree article

Birth and death of protein domains: a simple model of evolution explains power law behavior.

Karev GP, Wolf YI, Rzhetsky AY, Berezovskaya FS, Koonin EV.

BMC Evol Biol. 2002 Oct 14;2(1):18.PMID: 12379152 [PubMed - indexed for MEDLINE]Related articlesFree article

Why highly expressed proteins evolve slowly.

Drummond DA, Bloom JD, Adami C, Wilke CO, Arnold FH.

Proc Natl Acad Sci U S A. 2005 Oct 4;102(40):14338-43. Epub 2005 Sep 21.PMID: 16176987 [PubMed - indexed for MEDLINE]Related articlesFree article

Fungal Zuotin proteins evolved from MIDA1-like factors by lineage-specific loss of MYB domains.

Braun EL, Grotewold E.

Mol Biol Evol. 2001 Jul;18(7):1401-12.PMID: 11420378 [PubMed - indexed for MEDLINE]Related articlesFree article

Genomewide comparative phylogenetic and molecular evolutionary analysis of tubby-like protein family in Arabidopsis, rice, and poplar.

Yang Z, Zhou Y, Wang X, Gu S, Yu J, Liang G, Yan C, Xu C.

Genomics. 2008 Oct;92(4):246-53. Epub 2008 Jul 23.PMID: 18620041 [PubMed - indexed for MEDLINE]Related articles

Multifunctionality dominantly determines the rate of human housekeeping and tissue specific interacting protein evolution.

Podder S, Mukhopadhyay P, Ghosh TC.

Gene. 2009 Jun 15;439(1-2):11-6. Epub 2009 Mar 20.PMID: 19306918 [PubMed - indexed for MEDLINE]Related articles

Heterotachy and functional shift in protein evolution.

Philippe H, Casane D, Gribaldo S, Lopez P, Meunier J.

IUBMB Life. 2003 Apr-May;55(4-5):257-65. Review.PMID: 12880207 [PubMed - indexed for MEDLINE]Related articles

Evolutionary constraints on yeast protein size.

Warringer J, Blomberg A.

BMC Evol Biol. 2006 Aug 15;6:61.PMID: 16911784 [PubMed - indexed for MEDLINE]Related articlesFree article

STAND, a class of P-loop NTPases including animal and plant regulators of programmed cell death: multiple, complex domain architectures, unusual phyletic patterns, and evolution by horizontal gene transfer.

Leipe DD, Koonin EV, Aravind L.

J Mol Biol. 2004 Oct 8;343(1):1-28. Review.PMID: 15381417 [PubMed - indexed for MEDLINE]Related articles