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    Results: 1 to 20 of 116

    1.

    Overview of BioCreative II gene mention recognition.

    Smith L, Tanabe LK, Ando RJ, Kuo CJ, Chung IF, Hsu CN, Lin YS, Klinger R, Friedrich CM, Ganchev K, Torii M, Liu H, Haddow B, Struble CA, Povinelli RJ, Vlachos A, Baumgartner WA Jr, Hunter L, Carpenter B, Tsai RT, Dai HJ, Liu F, Chen Y, Sun C, Katrenko S, Adriaans P, Blaschke C, Torres R, Neves M, Nakov P, Divoli A, Maña-López M, Mata J, Wilbur WJ.

    Genome Biol. 2008;9 Suppl 2:S2. Epub 2008 Sep 1.

    PMID:
    18834493
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    2.

    Evaluation of text-mining systems for biology: overview of the Second BioCreative community challenge.

    Krallinger M, Morgan A, Smith L, Leitner F, Tanabe L, Wilbur J, Hirschman L, Valencia A.

    Genome Biol. 2008;9 Suppl 2:S1. Epub 2008 Sep 1.

    PMID:
    18834487
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    3.

    Overview of the protein-protein interaction annotation extraction task of BioCreative II.

    Krallinger M, Leitner F, Rodriguez-Penagos C, Valencia A.

    Genome Biol. 2008;9 Suppl 2:S4. Epub 2008 Sep 1.

    PMID:
    18834495
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    4.

    Overview of BioCreative II gene normalization.

    Morgan AA, Lu Z, Wang X, Cohen AM, Fluck J, Ruch P, Divoli A, Fundel K, Leaman R, Hakenberg J, Sun C, Liu HH, Torres R, Krauthammer M, Lau WW, Liu H, Hsu CN, Schuemie M, Cohen KB, Hirschman L.

    Genome Biol. 2008;9 Suppl 2:S3. Epub 2008 Sep 1.

    PMID:
    18834494
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    5.

    BioCreAtIvE task 1A: gene mention finding evaluation.

    Yeh A, Morgan A, Colosimo M, Hirschman L.

    BMC Bioinformatics. 2005;6 Suppl 1:S2. Epub 2005 May 24.

    PMID:
    15960832
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    6.

    Overview of BioCreAtIvE: critical assessment of information extraction for biology.

    Hirschman L, Yeh A, Blaschke C, Valencia A.

    BMC Bioinformatics. 2005;6 Suppl 1:S1. Epub 2005 May 24.

    PMID:
    15960821
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    7.

    Exploring species-based strategies for gene normalization.

    Verspoor K, Roeder C, Johnson HL, Cohen KB, Baumgartner WA Jr, Hunter LE.

    IEEE/ACM Trans Comput Biol Bioinform. 2010 Jul-Sep;7(3):462-71.

    PMID:
    20671318
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    8.

    Text detective: a rule-based system for gene annotation in biomedical texts.

    Tamames J.

    BMC Bioinformatics. 2005;6 Suppl 1:S10. Epub 2005 May 24.

    PMID:
    15960822
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    9.

    Overview of BioCreAtIvE task 1B: normalized gene lists.

    Hirschman L, Colosimo M, Morgan A, Yeh A.

    BMC Bioinformatics. 2005;6 Suppl 1:S11. Epub 2005 May 24.

    PMID:
    15960823
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    10.

    OntoGene in BioCreative II.

    Rinaldi F, Kappeler T, Kaljurand K, Schneider G, Klenner M, Clematide S, Hess M, von Allmen JM, Parisot P, Romacker M, Vachon T.

    Genome Biol. 2008;9 Suppl 2:S13. Epub 2008 Sep 1.

    PMID:
    18834491
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    11.

    OntoGene in BioCreative II.5.

    Rinaldi F, Schneider G, Kaljurand K, Clematide S, Vachon T, Romacker M.

    IEEE/ACM Trans Comput Biol Bioinform. 2010 Jul-Sep;7(3):472-80.

    PMID:
    20671319
    [PubMed - indexed for MEDLINE]
    12.

    Recognition of protein/gene names from text using an ensemble of classifiers.

    Zhou G, Shen D, Zhang J, Su J, Tan S.

    BMC Bioinformatics. 2005;6 Suppl 1:S7. Epub 2005 May 24.

    PMID:
    15960841
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    13.

    Integrating high dimensional bi-directional parsing models for gene mention tagging.

    Hsu CN, Chang YM, Kuo CJ, Lin YS, Huang HS, Chung IF.

    Bioinformatics. 2008 Jul 1;24(13):i286-94.

    PMID:
    18586726
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    14.

    ProMiner: rule-based protein and gene entity recognition.

    Hanisch D, Fundel K, Mevissen HT, Zimmer R, Fluck J.

    BMC Bioinformatics. 2005;6 Suppl 1:S14. Epub 2005 May 24.

    PMID:
    15960826
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    15.

    Incorporating rich background knowledge for gene named entity classification and recognition.

    Li Y, Lin H, Yang Z.

    BMC Bioinformatics. 2009 Jul 17;10:223.

    PMID:
    19615051
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    16.

    Gene mention normalization and interaction extraction with context models and sentence motifs.

    Hakenberg J, Plake C, Royer L, Strobelt H, Leser U, Schroeder M.

    Genome Biol. 2008;9 Suppl 2:S14. Epub 2008 Sep 1.

    PMID:
    18834492
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    17.

    MINT and IntAct contribute to the Second BioCreative challenge: serving the text-mining community with high quality molecular interaction data.

    Chatr-aryamontri A, Kerrien S, Khadake J, Orchard S, Ceol A, Licata L, Castagnoli L, Costa S, Derow C, Huntley R, Aranda B, Leroy C, Thorneycroft D, Apweiler R, Cesareni G, Hermjakob H.

    Genome Biol. 2008;9 Suppl 2:S5. Epub 2008 Sep 1.

    PMID:
    18834496
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    18.

    In silico prioritisation of candidate genes for prokaryotic gene function discovery: an application of phylogenetic profiles.

    Lin FP, Coiera E, Lan R, Sintchenko V.

    BMC Bioinformatics. 2009 Mar 17;10:86.

    PMID:
    19292914
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    19.

    SciMiner: web-based literature mining tool for target identification and functional enrichment analysis.

    Hur J, Schuyler AD, States DJ, Feldman EL.

    Bioinformatics. 2009 Mar 15;25(6):838-40. Epub 2009 Feb 2.

    PMID:
    19188191
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    20.

    BioTagger-GM: a gene/protein name recognition system.

    Torii M, Hu Z, Wu CH, Liu H.

    J Am Med Inform Assoc. 2009 Mar-Apr;16(2):247-55. Epub 2008 Dec 11.

    PMID:
    19074302
    [PubMed - indexed for MEDLINE]
    Free PMC Article

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