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    Results: 1 to 20 of 182

    1.

    Gene mention normalization and interaction extraction with context models and sentence motifs.

    Hakenberg J, Plake C, Royer L, Strobelt H, Leser U, Schroeder M.

    Genome Biol. 2008;9 Suppl 2:S14. Epub 2008 Sep 1.

    PMID:
    18834492
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    2.

    Overview of the protein-protein interaction annotation extraction task of BioCreative II.

    Krallinger M, Leitner F, Rodriguez-Penagos C, Valencia A.

    Genome Biol. 2008;9 Suppl 2:S4. Epub 2008 Sep 1.

    PMID:
    18834495
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    3.

    Inter-species normalization of gene mentions with GNAT.

    Hakenberg J, Plake C, Leaman R, Schroeder M, Gonzalez G.

    Bioinformatics. 2008 Aug 15;24(16):i126-132.

    PMID:
    18689813
    [PubMed - indexed for MEDLINE]
    Free Article
    4.

    Evaluation of text-mining systems for biology: overview of the Second BioCreative community challenge.

    Krallinger M, Morgan A, Smith L, Leitner F, Tanabe L, Wilbur J, Hirschman L, Valencia A.

    Genome Biol. 2008;9 Suppl 2:S1. Epub 2008 Sep 1.

    PMID:
    18834487
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    5.

    Concept recognition for extracting protein interaction relations from biomedical text.

    Baumgartner WA Jr, Lu Z, Johnson HL, Caporaso JG, Paquette J, Lindemann A, White EK, Medvedeva O, Cohen KB, Hunter L.

    Genome Biol. 2008;9 Suppl 2:S9. Epub 2008 Sep 1.

    PMID:
    18834500
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    6.

    SciMiner: web-based literature mining tool for target identification and functional enrichment analysis.

    Hur J, Schuyler AD, States DJ, Feldman EL.

    Bioinformatics. 2009 Mar 15;25(6):838-40. Epub 2009 Feb 2.

    PMID:
    19188191
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    7.

    Exploring species-based strategies for gene normalization.

    Verspoor K, Roeder C, Johnson HL, Cohen KB, Baumgartner WA Jr, Hunter LE.

    IEEE/ACM Trans Comput Biol Bioinform. 2010 Jul-Sep;7(3):462-71.

    PMID:
    20671318
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    8.

    MINT and IntAct contribute to the Second BioCreative challenge: serving the text-mining community with high quality molecular interaction data.

    Chatr-aryamontri A, Kerrien S, Khadake J, Orchard S, Ceol A, Licata L, Castagnoli L, Costa S, Derow C, Huntley R, Aranda B, Leroy C, Thorneycroft D, Apweiler R, Cesareni G, Hermjakob H.

    Genome Biol. 2008;9 Suppl 2:S5. Epub 2008 Sep 1.

    PMID:
    18834496
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    9.

    A simple approach for protein name identification: prospects and limits.

    Fundel K, Güttler D, Zimmer R, Apostolakis J.

    BMC Bioinformatics. 2005;6 Suppl 1:S15. Epub 2005 May 24.

    PMID:
    15960827
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    10.

    Introducing meta-services for biomedical information extraction.

    Leitner F, Krallinger M, Rodriguez-Penagos C, Hakenberg J, Plake C, Kuo CJ, Hsu CN, Tsai RT, Hung HC, Lau WW, Johnson CA, Saetre R, Yoshida K, Chen YH, Kim S, Shin SY, Zhang BT, Baumgartner WA Jr, Hunter L, Haddow B, Matthews M, Wang X, Ruch P, Ehrler F, Ozgür A, Erkan G, Radev DR, Krauthammer M, Luong T, Hoffmann R, Sander C, Valencia A.

    Genome Biol. 2008;9 Suppl 2:S6. Epub 2008 Sep 1.

    PMID:
    18834497
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    11.

    The GNAT library for local and remote gene mention normalization.

    Hakenberg J, Gerner M, Haeussler M, Solt I, Plake C, Schroeder M, Gonzalez G, Nenadic G, Bergman CM.

    Bioinformatics. 2011 Oct 1;27(19):2769-71. Epub 2011 Aug 3.

    PMID:
    21813477
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    12.

    Efficient extraction of protein-protein interactions from full-text articles.

    Hakenberg J, Leaman R, Vo NH, Jonnalagadda S, Sullivan R, Miller C, Tari L, Baral C, Gonzalez G.

    IEEE/ACM Trans Comput Biol Bioinform. 2010 Jul-Sep;7(3):481-94.

    PMID:
    20498514
    [PubMed - indexed for MEDLINE]
    13.

    Extraction of semantic biomedical relations from text using conditional random fields.

    Bundschus M, Dejori M, Stetter M, Tresp V, Kriegel HP.

    BMC Bioinformatics. 2008 Apr 23;9:207.

    PMID:
    18433469
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    14.

    Overview of BioCreAtIvE: critical assessment of information extraction for biology.

    Hirschman L, Yeh A, Blaschke C, Valencia A.

    BMC Bioinformatics. 2005;6 Suppl 1:S1. Epub 2005 May 24.

    PMID:
    15960821
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    15.

    Linking genes to literature: text mining, information extraction, and retrieval applications for biology.

    Krallinger M, Valencia A, Hirschman L.

    Genome Biol. 2008;9 Suppl 2:S8. Epub 2008 Sep 1. Review.

    PMID:
    18834499
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    16.

    A realistic assessment of methods for extracting gene/protein interactions from free text.

    Kabiljo R, Clegg AB, Shepherd AJ.

    BMC Bioinformatics. 2009 Jul 28;10:233.

    PMID:
    19635172
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    17.

    Gene and protein nomenclature in public databases.

    Fundel K, Zimmer R.

    BMC Bioinformatics. 2006 Aug 9;7:372.

    PMID:
    16899134
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    18.

    Text mining and protein annotations: the construction and use of protein description sentences.

    Krallinger M, Malik R, Valencia A.

    Genome Inform. 2006;17(2):121-30.

    PMID:
    17503385
    [PubMed - indexed for MEDLINE]
    19.

    Overview of the BioCreative III Workshop.

    Arighi CN, Lu Z, Krallinger M, Cohen KB, Wilbur WJ, Valencia A, Hirschman L, Wu CH.

    BMC Bioinformatics. 2011 Oct 3;12 Suppl 8:S1.

    PMID:
    22151647
    [PubMed - in process]
    Free PMC Article
    20.

    BioCreAtIvE task 1A: gene mention finding evaluation.

    Yeh A, Morgan A, Colosimo M, Hirschman L.

    BMC Bioinformatics. 2005;6 Suppl 1:S2. Epub 2005 May 24.

    PMID:
    15960832
    [PubMed - indexed for MEDLINE]
    Free PMC Article

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