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    Results: 1 to 20 of 165

    1.

    Mining physical protein-protein interactions from the literature.

    Huang M, Ding S, Wang H, Zhu X.

    Genome Biol. 2008;9 Suppl 2:S12. Epub 2008 Sep 1.

    PMID:
    18834490
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    2.

    Evaluation of text-mining systems for biology: overview of the Second BioCreative community challenge.

    Krallinger M, Morgan A, Smith L, Leitner F, Tanabe L, Wilbur J, Hirschman L, Valencia A.

    Genome Biol. 2008;9 Suppl 2:S1. Epub 2008 Sep 1.

    PMID:
    18834487
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    3.

    MINT and IntAct contribute to the Second BioCreative challenge: serving the text-mining community with high quality molecular interaction data.

    Chatr-aryamontri A, Kerrien S, Khadake J, Orchard S, Ceol A, Licata L, Castagnoli L, Costa S, Derow C, Huntley R, Aranda B, Leroy C, Thorneycroft D, Apweiler R, Cesareni G, Hermjakob H.

    Genome Biol. 2008;9 Suppl 2:S5. Epub 2008 Sep 1.

    PMID:
    18834496
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    4.

    Overview of the protein-protein interaction annotation extraction task of BioCreative II.

    Krallinger M, Leitner F, Rodriguez-Penagos C, Valencia A.

    Genome Biol. 2008;9 Suppl 2:S4. Epub 2008 Sep 1.

    PMID:
    18834495
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    5.

    Evaluation of BioCreAtIvE assessment of task 2.

    Blaschke C, Leon EA, Krallinger M, Valencia A.

    BMC Bioinformatics. 2005;6 Suppl 1:S16. Epub 2005 May 24.

    PMID:
    15960828
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    6.

    Overview of BioCreAtIvE: critical assessment of information extraction for biology.

    Hirschman L, Yeh A, Blaschke C, Valencia A.

    BMC Bioinformatics. 2005;6 Suppl 1:S1. Epub 2005 May 24.

    PMID:
    15960821
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    7.

    An evaluation of GO annotation retrieval for BioCreAtIvE and GOA.

    Camon EB, Barrell DG, Dimmer EC, Lee V, Magrane M, Maslen J, Binns D, Apweiler R.

    BMC Bioinformatics. 2005;6 Suppl 1:S17. Epub 2005 May 24.

    PMID:
    15960829
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    8.

    BioCreative III interactive task: an overview.

    Arighi CN, Roberts PM, Agarwal S, Bhattacharya S, Cesareni G, Chatr-Aryamontri A, Clematide S, Gaudet P, Giglio MG, Harrow I, Huala E, Krallinger M, Leser U, Li D, Liu F, Lu Z, Maltais LJ, Okazaki N, Perfetto L, Rinaldi F, Sætre R, Salgado D, Srinivasan P, Thomas PE, Toldo L, Hirschman L, Wu CH.

    BMC Bioinformatics. 2011 Oct 3;12 Suppl 8:S4.

    PMID:
    22151968
    [PubMed - in process]
    Free PMC Article
    9.

    An Overview of BioCreative II.5.

    Leitner F, Mardis SA, Krallinger M, Cesareni G, Hirschman LA, Valencia A.

    IEEE/ACM Trans Comput Biol Bioinform. 2010 Jul-Sep;7(3):385-99.

    PMID:
    20704011
    [PubMed - indexed for MEDLINE]
    10.

    The Protein-Protein Interaction tasks of BioCreative III: classification/ranking of articles and linking bio-ontology concepts to full text.

    Krallinger M, Vazquez M, Leitner F, Salgado D, Chatr-Aryamontri A, Winter A, Perfetto L, Briganti L, Licata L, Iannuccelli M, Castagnoli L, Cesareni G, Tyers M, Schneider G, Rinaldi F, Leaman R, Gonzalez G, Matos S, Kim S, Wilbur WJ, Rocha L, Shatkay H, Tendulkar AV, Agarwal S, Liu F, Wang X, Rak R, Noto K, Elkan C, Lu Z, Dogan RI, Fontaine JF, Andrade-Navarro MA, Valencia A.

    BMC Bioinformatics. 2011 Oct 3;12 Suppl 8:S3.

    PMID:
    22151929
    [PubMed - in process]
    Free PMC Article
    11.

    A realistic assessment of methods for extracting gene/protein interactions from free text.

    Kabiljo R, Clegg AB, Shepherd AJ.

    BMC Bioinformatics. 2009 Jul 28;10:233.

    PMID:
    19635172
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    12.

    Dynamic programming re-ranking for PPI interactor and pair extraction in full-text articles.

    Tsai RT, Lai PT.

    BMC Bioinformatics. 2011 Feb 23;12:60.

    PMID:
    21342534
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    13.

    Overview of the BioCreative III Workshop.

    Arighi CN, Lu Z, Krallinger M, Cohen KB, Wilbur WJ, Valencia A, Hirschman L, Wu CH.

    BMC Bioinformatics. 2011 Oct 3;12 Suppl 8:S1.

    PMID:
    22151647
    [PubMed - in process]
    Free PMC Article
    14.

    Concept recognition for extracting protein interaction relations from biomedical text.

    Baumgartner WA Jr, Lu Z, Johnson HL, Caporaso JG, Paquette J, Lindemann A, White EK, Medvedeva O, Cohen KB, Hunter L.

    Genome Biol. 2008;9 Suppl 2:S9. Epub 2008 Sep 1.

    PMID:
    18834500
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    15.

    Exploiting likely-positive and unlabeled data to improve the identification of protein-protein interaction articles.

    Tsai RT, Hung HC, Dai HJ, Lin YW, Hsu WL.

    BMC Bioinformatics. 2008;9 Suppl 1:S3.

    PMID:
    18315856
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    16.

    Uncovering protein interaction in abstracts and text using a novel linear model and word proximity networks.

    Abi-Haidar A, Kaur J, Maguitman A, Radivojac P, Rechtsteiner A, Verspoor K, Wang Z, Rocha LM.

    Genome Biol. 2008;9 Suppl 2:S11. Epub 2008 Sep 1.

    PMID:
    18834489
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    17.

    A linear classifier based on entity recognition tools and a statistical approach to method extraction in the protein-protein interaction literature.

    Lourenço A, Conover M, Wong A, Nematzadeh A, Pan F, Shatkay H, Rocha LM.

    BMC Bioinformatics. 2011 Oct 3;12 Suppl 8:S12.

    PMID:
    22151823
    [PubMed - in process]
    Free PMC Article
    18.

    Analysis of biological processes and diseases using text mining approaches.

    Krallinger M, Leitner F, Valencia A.

    Methods Mol Biol. 2010;593:341-82. Review.

    PMID:
    19957157
    [PubMed - indexed for MEDLINE]
    19.

    Fly-DPI: database of protein interactomes for D. melanogaster in the approach of systems biology.

    Lin CY, Chen SH, Cho CS, Chen CL, Lin FK, Lin CH, Chen PY, Lo CZ, Hsiung CA.

    BMC Bioinformatics. 2006 Dec 18;7 Suppl 5:S18.

    PMID:
    17254302
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    20.

    BioCreAtIvE task 1A: gene mention finding evaluation.

    Yeh A, Morgan A, Colosimo M, Hirschman L.

    BMC Bioinformatics. 2005;6 Suppl 1:S2. Epub 2005 May 24.

    PMID:
    15960832
    [PubMed - indexed for MEDLINE]
    Free PMC Article

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