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    Results: 1 to 20 of 138

    1.

    Uncovering protein interaction in abstracts and text using a novel linear model and word proximity networks.

    Abi-Haidar A, Kaur J, Maguitman A, Radivojac P, Rechtsteiner A, Verspoor K, Wang Z, Rocha LM.

    Genome Biol. 2008;9 Suppl 2:S11. Epub 2008 Sep 1.

    PMID:
    18834489
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    2.

    Classification of protein-protein interaction full-text documents using text and citation network features.

    Kolchinsky A, Abi-Haidar A, Kaur J, Hamed AA, Rocha LM.

    IEEE/ACM Trans Comput Biol Bioinform. 2010 Jul-Sep;7(3):400-11.

    PMID:
    20671313
    [PubMed - indexed for MEDLINE]
    3.

    Overview of the protein-protein interaction annotation extraction task of BioCreative II.

    Krallinger M, Leitner F, Rodriguez-Penagos C, Valencia A.

    Genome Biol. 2008;9 Suppl 2:S4. Epub 2008 Sep 1.

    PMID:
    18834495
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    4.

    A linear classifier based on entity recognition tools and a statistical approach to method extraction in the protein-protein interaction literature.

    Lourenço A, Conover M, Wong A, Nematzadeh A, Pan F, Shatkay H, Rocha LM.

    BMC Bioinformatics. 2011 Oct 3;12 Suppl 8:S12.

    PMID:
    22151823
    [PubMed - in process]
    Free PMC Article
    5.

    Evaluation of text-mining systems for biology: overview of the Second BioCreative community challenge.

    Krallinger M, Morgan A, Smith L, Leitner F, Tanabe L, Wilbur J, Hirschman L, Valencia A.

    Genome Biol. 2008;9 Suppl 2:S1. Epub 2008 Sep 1.

    PMID:
    18834487
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    6.

    Exploiting likely-positive and unlabeled data to improve the identification of protein-protein interaction articles.

    Tsai RT, Hung HC, Dai HJ, Lin YW, Hsu WL.

    BMC Bioinformatics. 2008;9 Suppl 1:S3.

    PMID:
    18315856
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    7.

    Mining physical protein-protein interactions from the literature.

    Huang M, Ding S, Wang H, Zhu X.

    Genome Biol. 2008;9 Suppl 2:S12. Epub 2008 Sep 1.

    PMID:
    18834490
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    8.

    The Protein-Protein Interaction tasks of BioCreative III: classification/ranking of articles and linking bio-ontology concepts to full text.

    Krallinger M, Vazquez M, Leitner F, Salgado D, Chatr-Aryamontri A, Winter A, Perfetto L, Briganti L, Licata L, Iannuccelli M, Castagnoli L, Cesareni G, Tyers M, Schneider G, Rinaldi F, Leaman R, Gonzalez G, Matos S, Kim S, Wilbur WJ, Rocha L, Shatkay H, Tendulkar AV, Agarwal S, Liu F, Wang X, Rak R, Noto K, Elkan C, Lu Z, Dogan RI, Fontaine JF, Andrade-Navarro MA, Valencia A.

    BMC Bioinformatics. 2011 Oct 3;12 Suppl 8:S3.

    PMID:
    22151929
    [PubMed - in process]
    Free PMC Article
    9.

    Mining protein function from text using term-based support vector machines.

    Rice SB, Nenadic G, Stapley BJ.

    BMC Bioinformatics. 2005;6 Suppl 1:S22. Epub 2005 May 24.

    PMID:
    15960835
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    10.

    MINT and IntAct contribute to the Second BioCreative challenge: serving the text-mining community with high quality molecular interaction data.

    Chatr-aryamontri A, Kerrien S, Khadake J, Orchard S, Ceol A, Licata L, Castagnoli L, Costa S, Derow C, Huntley R, Aranda B, Leroy C, Thorneycroft D, Apweiler R, Cesareni G, Hermjakob H.

    Genome Biol. 2008;9 Suppl 2:S5. Epub 2008 Sep 1.

    PMID:
    18834496
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    11.

    Empirical investigations into full-text protein interaction Article Categorization Task (ACT) in the BioCreative II.5 Challenge.

    Lan M, Su J.

    IEEE/ACM Trans Comput Biol Bioinform. 2010 Jul-Sep;7(3):421-7.

    PMID:
    20671314
    [PubMed - indexed for MEDLINE]
    12.

    Improving classification in protein structure databases using text mining.

    Koussounadis A, Redfern OC, Jones DT.

    BMC Bioinformatics. 2009 May 5;10:129.

    PMID:
    19416501
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    13.

    The TREC 2004 genomics track categorization task: classifying full text biomedical documents.

    Cohen AM, Hersh WR.

    J Biomed Discov Collab. 2006 Mar 14;1:4.

    PMID:
    16722582
    [PubMed]
    Free PMC Article
    14.

    Categorization of sentence types in medical abstracts.

    McKnight L, Srinivasan P.

    AMIA Annu Symp Proc. 2003:440-4.

    PMID:
    14728211
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    15.

    Gene mention normalization and interaction extraction with context models and sentence motifs.

    Hakenberg J, Plake C, Royer L, Strobelt H, Leser U, Schroeder M.

    Genome Biol. 2008;9 Suppl 2:S14. Epub 2008 Sep 1.

    PMID:
    18834492
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    16.

    An Overview of BioCreative II.5.

    Leitner F, Mardis SA, Krallinger M, Cesareni G, Hirschman LA, Valencia A.

    IEEE/ACM Trans Comput Biol Bioinform. 2010 Jul-Sep;7(3):385-99.

    PMID:
    20704011
    [PubMed - indexed for MEDLINE]
    17.

    Automatic document classification of biological literature.

    Chen D, Müller HM, Sternberg PW.

    BMC Bioinformatics. 2006 Aug 7;7:370.

    PMID:
    16893465
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    18.

    Overview of the BioCreative III Workshop.

    Arighi CN, Lu Z, Krallinger M, Cohen KB, Wilbur WJ, Valencia A, Hirschman L, Wu CH.

    BMC Bioinformatics. 2011 Oct 3;12 Suppl 8:S1.

    PMID:
    22151647
    [PubMed - in process]
    Free PMC Article
    19.

    Is searching full text more effective than searching abstracts?

    Lin J.

    BMC Bioinformatics. 2009 Feb 3;10:46.

    PMID:
    19192280
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    20.

    Two-phase biomedical named entity recognition using CRFs.

    Li L, Zhou R, Huang D.

    Comput Biol Chem. 2009 Aug;33(4):334-8. Epub 2009 Aug 4.

    PMID:
    19656727
    [PubMed - indexed for MEDLINE]

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