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    Results: 1 to 20 of 129

    1.

    Automating curation using a natural language processing pipeline.

    Alex B, Grover C, Haddow B, Kabadjov M, Klein E, Matthews M, Tobin R, Wang X.

    Genome Biol. 2008;9 Suppl 2:S10. Epub 2008 Sep 1.

    PMID:
    18834488
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    2.

    Evaluation of text-mining systems for biology: overview of the Second BioCreative community challenge.

    Krallinger M, Morgan A, Smith L, Leitner F, Tanabe L, Wilbur J, Hirschman L, Valencia A.

    Genome Biol. 2008;9 Suppl 2:S1. Epub 2008 Sep 1.

    PMID:
    18834487
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    3.

    BioLMiner System: interaction normalization task and interaction pair task in the BioCreative II.5 challenge.

    Chen Y, Liu F, Manderick B.

    IEEE/ACM Trans Comput Biol Bioinform. 2010 Jul-Sep;7(3):428-41.

    PMID:
    20671315
    [PubMed - indexed for MEDLINE]
    4.

    A linear classifier based on entity recognition tools and a statistical approach to method extraction in the protein-protein interaction literature.

    Lourenço A, Conover M, Wong A, Nematzadeh A, Pan F, Shatkay H, Rocha LM.

    BMC Bioinformatics. 2011 Oct 3;12 Suppl 8:S12.

    PMID:
    22151823
    [PubMed - in process]
    Free PMC Article
    5.

    Overview of the BioCreative III Workshop.

    Arighi CN, Lu Z, Krallinger M, Cohen KB, Wilbur WJ, Valencia A, Hirschman L, Wu CH.

    BMC Bioinformatics. 2011 Oct 3;12 Suppl 8:S1.

    PMID:
    22151647
    [PubMed - in process]
    Free PMC Article
    6.

    Overview of the protein-protein interaction annotation extraction task of BioCreative II.

    Krallinger M, Leitner F, Rodriguez-Penagos C, Valencia A.

    Genome Biol. 2008;9 Suppl 2:S4. Epub 2008 Sep 1.

    PMID:
    18834495
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    7.

    BioCreative III interactive task: an overview.

    Arighi CN, Roberts PM, Agarwal S, Bhattacharya S, Cesareni G, Chatr-Aryamontri A, Clematide S, Gaudet P, Giglio MG, Harrow I, Huala E, Krallinger M, Leser U, Li D, Liu F, Lu Z, Maltais LJ, Okazaki N, Perfetto L, Rinaldi F, Sætre R, Salgado D, Srinivasan P, Thomas PE, Toldo L, Hirschman L, Wu CH.

    BMC Bioinformatics. 2011 Oct 3;12 Suppl 8:S4.

    PMID:
    22151968
    [PubMed - in process]
    Free PMC Article
    8.

    Benchmarking of the 2010 BioCreative Challenge III text-mining competition by the BioGRID and MINT interaction databases.

    Chatr-Aryamontri A, Winter A, Perfetto L, Briganti L, Licata L, Iannuccelli M, Castagnoli L, Cesareni G, Tyers M.

    BMC Bioinformatics. 2011 Oct 3;12 Suppl 8:S8.

    PMID:
    22151178
    [PubMed - in process]
    Free PMC Article
    9.

    Natural language processing in aid of FlyBase curators.

    Karamanis N, Seal R, Lewin I, McQuilton P, Vlachos A, Gasperin C, Drysdale R, Briscoe T.

    BMC Bioinformatics. 2008 Apr 14;9:193.

    PMID:
    18410678
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    10.

    Feature generation and representations for protein-protein interaction classification.

    Lan M, Tan CL, Su J.

    J Biomed Inform. 2009 Oct;42(5):866-72. Epub 2009 Jul 16.

    PMID:
    19616641
    [PubMed - indexed for MEDLINE]
    11.

    Exploring species-based strategies for gene normalization.

    Verspoor K, Roeder C, Johnson HL, Cohen KB, Baumgartner WA Jr, Hunter LE.

    IEEE/ACM Trans Comput Biol Bioinform. 2010 Jul-Sep;7(3):462-71.

    PMID:
    20671318
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    12.

    Extraction of semantic biomedical relations from text using conditional random fields.

    Bundschus M, Dejori M, Stetter M, Tresp V, Kriegel HP.

    BMC Bioinformatics. 2008 Apr 23;9:207.

    PMID:
    18433469
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    13.

    OntoGene in BioCreative II.

    Rinaldi F, Kappeler T, Kaljurand K, Schneider G, Klenner M, Clematide S, Hess M, von Allmen JM, Parisot P, Romacker M, Vachon T.

    Genome Biol. 2008;9 Suppl 2:S13. Epub 2008 Sep 1.

    PMID:
    18834491
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    14.

    Concept recognition for extracting protein interaction relations from biomedical text.

    Baumgartner WA Jr, Lu Z, Johnson HL, Caporaso JG, Paquette J, Lindemann A, White EK, Medvedeva O, Cohen KB, Hunter L.

    Genome Biol. 2008;9 Suppl 2:S9. Epub 2008 Sep 1.

    PMID:
    18834500
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    15.

    Gene mention normalization and interaction extraction with context models and sentence motifs.

    Hakenberg J, Plake C, Royer L, Strobelt H, Leser U, Schroeder M.

    Genome Biol. 2008;9 Suppl 2:S14. Epub 2008 Sep 1.

    PMID:
    18834492
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    16.

    A natural language processing (NLP) tool to assist in the curation of the laboratory Mouse Tumor Biology Database.

    Xu H, Krupke D, Blake J, Friedman C.

    AMIA Annu Symp Proc. 2006:1150.

    PMID:
    17238769
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    17.

    Extracting phenotypic information from the literature via natural language processing.

    Chen L, Friedman C.

    Stud Health Technol Inform. 2004;107(Pt 2):758-62.

    PMID:
    15360914
    [PubMed - indexed for MEDLINE]
    18.

    Assisted curation: does text mining really help?

    Alex B, Grover C, Haddow B, Kabadjov M, Klein E, Matthews M, Roebuck S, Tobin R, Wang X.

    Pac Symp Biocomput. 2008:556-67.

    PMID:
    18229715
    [PubMed - indexed for MEDLINE]
    Free Article
    19.

    The TREC 2004 genomics track categorization task: classifying full text biomedical documents.

    Cohen AM, Hersh WR.

    J Biomed Discov Collab. 2006 Mar 14;1:4.

    PMID:
    16722582
    [PubMed]
    Free PMC Article
    20.

    Evaluating contributions of natural language parsers to protein-protein interaction extraction.

    Miyao Y, Sagae K, Saetre R, Matsuzaki T, Tsujii J.

    Bioinformatics. 2009 Feb 1;25(3):394-400. Epub 2008 Dec 9.

    PMID:
    19073593
    [PubMed - indexed for MEDLINE]
    Free PMC Article

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