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    Results: 1 to 20 of 545

    1.

    Evaluation of text-mining systems for biology: overview of the Second BioCreative community challenge.

    Krallinger M, Morgan A, Smith L, Leitner F, Tanabe L, Wilbur J, Hirschman L, Valencia A.

    Genome Biol. 2008;9 Suppl 2:S1. Epub 2008 Sep 1.

    PMID:
    18834487
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    2.

    Overview of the protein-protein interaction annotation extraction task of BioCreative II.

    Krallinger M, Leitner F, Rodriguez-Penagos C, Valencia A.

    Genome Biol. 2008;9 Suppl 2:S4. Epub 2008 Sep 1.

    PMID:
    18834495
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    3.

    MINT and IntAct contribute to the Second BioCreative challenge: serving the text-mining community with high quality molecular interaction data.

    Chatr-aryamontri A, Kerrien S, Khadake J, Orchard S, Ceol A, Licata L, Castagnoli L, Costa S, Derow C, Huntley R, Aranda B, Leroy C, Thorneycroft D, Apweiler R, Cesareni G, Hermjakob H.

    Genome Biol. 2008;9 Suppl 2:S5. Epub 2008 Sep 1.

    PMID:
    18834496
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    4.

    Overview of BioCreAtIvE: critical assessment of information extraction for biology.

    Hirschman L, Yeh A, Blaschke C, Valencia A.

    BMC Bioinformatics. 2005;6 Suppl 1:S1. Epub 2005 May 24.

    PMID:
    15960821
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    5.

    Evaluation of BioCreAtIvE assessment of task 2.

    Blaschke C, Leon EA, Krallinger M, Valencia A.

    BMC Bioinformatics. 2005;6 Suppl 1:S16. Epub 2005 May 24.

    PMID:
    15960828
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    6.

    Overview of the BioCreative III Workshop.

    Arighi CN, Lu Z, Krallinger M, Cohen KB, Wilbur WJ, Valencia A, Hirschman L, Wu CH.

    BMC Bioinformatics. 2011 Oct 3;12 Suppl 8:S1.

    PMID:
    22151647
    [PubMed - in process]
    Free PMC Article
    7.

    An evaluation of GO annotation retrieval for BioCreAtIvE and GOA.

    Camon EB, Barrell DG, Dimmer EC, Lee V, Magrane M, Maslen J, Binns D, Apweiler R.

    BMC Bioinformatics. 2005;6 Suppl 1:S17. Epub 2005 May 24.

    PMID:
    15960829
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    8.

    BioCreative III interactive task: an overview.

    Arighi CN, Roberts PM, Agarwal S, Bhattacharya S, Cesareni G, Chatr-Aryamontri A, Clematide S, Gaudet P, Giglio MG, Harrow I, Huala E, Krallinger M, Leser U, Li D, Liu F, Lu Z, Maltais LJ, Okazaki N, Perfetto L, Rinaldi F, Sætre R, Salgado D, Srinivasan P, Thomas PE, Toldo L, Hirschman L, Wu CH.

    BMC Bioinformatics. 2011 Oct 3;12 Suppl 8:S4.

    PMID:
    22151968
    [PubMed - in process]
    Free PMC Article
    9.

    BioCreAtIvE task 1A: gene mention finding evaluation.

    Yeh A, Morgan A, Colosimo M, Hirschman L.

    BMC Bioinformatics. 2005;6 Suppl 1:S2. Epub 2005 May 24.

    PMID:
    15960832
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    10.

    The Protein-Protein Interaction tasks of BioCreative III: classification/ranking of articles and linking bio-ontology concepts to full text.

    Krallinger M, Vazquez M, Leitner F, Salgado D, Chatr-Aryamontri A, Winter A, Perfetto L, Briganti L, Licata L, Iannuccelli M, Castagnoli L, Cesareni G, Tyers M, Schneider G, Rinaldi F, Leaman R, Gonzalez G, Matos S, Kim S, Wilbur WJ, Rocha L, Shatkay H, Tendulkar AV, Agarwal S, Liu F, Wang X, Rak R, Noto K, Elkan C, Lu Z, Dogan RI, Fontaine JF, Andrade-Navarro MA, Valencia A.

    BMC Bioinformatics. 2011 Oct 3;12 Suppl 8:S3.

    PMID:
    22151929
    [PubMed - in process]
    Free PMC Article
    11.

    Mining physical protein-protein interactions from the literature.

    Huang M, Ding S, Wang H, Zhu X.

    Genome Biol. 2008;9 Suppl 2:S12. Epub 2008 Sep 1.

    PMID:
    18834490
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    12.

    Overview of BioCreative II gene normalization.

    Morgan AA, Lu Z, Wang X, Cohen AM, Fluck J, Ruch P, Divoli A, Fundel K, Leaman R, Hakenberg J, Sun C, Liu HH, Torres R, Krauthammer M, Lau WW, Liu H, Hsu CN, Schuemie M, Cohen KB, Hirschman L.

    Genome Biol. 2008;9 Suppl 2:S3. Epub 2008 Sep 1.

    PMID:
    18834494
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    13.

    Exploring species-based strategies for gene normalization.

    Verspoor K, Roeder C, Johnson HL, Cohen KB, Baumgartner WA Jr, Hunter LE.

    IEEE/ACM Trans Comput Biol Bioinform. 2010 Jul-Sep;7(3):462-71.

    PMID:
    20671318
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    14.

    Efficient extraction of protein-protein interactions from full-text articles.

    Hakenberg J, Leaman R, Vo NH, Jonnalagadda S, Sullivan R, Miller C, Tari L, Baral C, Gonzalez G.

    IEEE/ACM Trans Comput Biol Bioinform. 2010 Jul-Sep;7(3):481-94.

    PMID:
    20498514
    [PubMed - indexed for MEDLINE]
    15.

    BioLMiner System: interaction normalization task and interaction pair task in the BioCreative II.5 challenge.

    Chen Y, Liu F, Manderick B.

    IEEE/ACM Trans Comput Biol Bioinform. 2010 Jul-Sep;7(3):428-41.

    PMID:
    20671315
    [PubMed - indexed for MEDLINE]
    16.

    Analysis of biological processes and diseases using text mining approaches.

    Krallinger M, Leitner F, Valencia A.

    Methods Mol Biol. 2010;593:341-82. Review.

    PMID:
    19957157
    [PubMed - indexed for MEDLINE]
    17.

    Benchmarking of the 2010 BioCreative Challenge III text-mining competition by the BioGRID and MINT interaction databases.

    Chatr-Aryamontri A, Winter A, Perfetto L, Briganti L, Licata L, Iannuccelli M, Castagnoli L, Cesareni G, Tyers M.

    BMC Bioinformatics. 2011 Oct 3;12 Suppl 8:S8.

    PMID:
    22151178
    [PubMed - in process]
    Free PMC Article
    18.

    An Overview of BioCreative II.5.

    Leitner F, Mardis SA, Krallinger M, Cesareni G, Hirschman LA, Valencia A.

    IEEE/ACM Trans Comput Biol Bioinform. 2010 Jul-Sep;7(3):385-99.

    PMID:
    20704011
    [PubMed - indexed for MEDLINE]
    19.

    Linking genes to literature: text mining, information extraction, and retrieval applications for biology.

    Krallinger M, Valencia A, Hirschman L.

    Genome Biol. 2008;9 Suppl 2:S8. Epub 2008 Sep 1. Review.

    PMID:
    18834499
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    20.

    Automatic extraction of gene ontology annotation and its correlation with clusters in protein networks.

    Daraselia N, Yuryev A, Egorov S, Mazo I, Ispolatov I.

    BMC Bioinformatics. 2007 Jul 10;8:243.

    PMID:
    17620146
    [PubMed - indexed for MEDLINE]
    Free PMC Article

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