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Clustering-based approaches to SAGE data mining.

Wang H, Zheng H, Azuaje F.

BioData Min. 2008 Jul 17;1(1):5.PMID: 18822151 [PubMed - in process]Related articlesFree article

Poisson-based self-organizing feature maps and hierarchical clustering for serial analysis of gene expression data.

Wang H, Zheng H, Azuaje F.

IEEE/ACM Trans Comput Biol Bioinform. 2007 Apr-Jun;4(2):163-75.PMID: 17473311 [PubMed - indexed for MEDLINE]Related articles

A Poisson-based adaptive affinity propagation clustering for SAGE data.

Tang D, Zhu Q, Yang F.

Comput Biol Chem. 2010 Feb;34(1):63-70. Epub 2009 Dec 29.PMID: 20042369 [PubMed - in process]Related articles

Knowledge-guided multi-scale independent component analysis for biomarker identification.

Chen L, Xuan J, Wang C, Shih IeM, Wang Y, Zhang Z, Hoffman E, Clarke R.

BMC Bioinformatics. 2008 Oct 6;9:416.PMID: 18837990 [PubMed - indexed for MEDLINE]Related articlesFree article

Extract-SAGE: An integrated platform for cross-analysis and GA-based selection of SAGE data.

Yang CH, Shih1 TM, Hung YC, Chang HW, Chuang LY.

Bioinformation. 2009;3(7):291-292. Epub 2009 Feb 27.PMID: 19293993 [PubMed - as supplied by publisher]Related articlesFree article

Constraint-based knowledge discovery from SAGE data.

Klémal J, Blachon S, Soulet A, Crémilleux B, Gandrillon O.

In Silico Biol. 2008;8(2):157-75.PMID: 18928203 [PubMed - indexed for MEDLINE]Related articles

Application of Serial Analysis of Gene Expression in cancer research.

Yamashita T, Honda M, Kaneko S.

Curr Pharm Biotechnol. 2008 Oct;9(5):375-82. Review.PMID: 18855690 [PubMed - indexed for MEDLINE]Related articles

A score system for quality evaluation of RNA sequence tags: an improvement for gene expression profiling.

Pinheiro DG, Galante PA, de Souza SJ, Zago MA, Silva WA Jr.

BMC Bioinformatics. 2009 Jun 6;10:170.PMID: 19500384 [PubMed - indexed for MEDLINE]Related articlesFree article

Application of Multi-SOM clustering approach to macrophage gene expression analysis.

Ghouila A, Yahia SB, Malouche D, Jmel H, Laouini D, Guerfali FZ, Abdelhak S.

Infect Genet Evol. 2009 May;9(3):328-36. Epub 2008 Oct 17.PMID: 18992849 [PubMed - indexed for MEDLINE]Related articles

Target discovery from data mining approaches.

Yang Y, Adelstein SJ, Kassis AI.

Drug Discov Today. 2009 Feb;14(3-4):147-54. Epub 2009 Jan 20. Review.PMID: 19135549 [PubMed - indexed for MEDLINE]Related articles

SAGE application in the study of diabetes.

Takamura T, Misu H, Yamashita T, Kaneko S.

Curr Pharm Biotechnol. 2008 Oct;9(5):392-9. Review.PMID: 18855692 [PubMed - indexed for MEDLINE]Related articles

Analyzing miRNA co-expression networks to explore TF-miRNA regulation.

Bandyopadhyay S, Bhattacharyya M.

BMC Bioinformatics. 2009 May 28;10:163.PMID: 19476620 [PubMed - indexed for MEDLINE]Related articlesFree article

Modified PCR methods for 3' end amplification from serial analysis of gene expression (SAGE) tags.

Xu WJ, Wang ZX, Qiao ZD.

FEBS J. 2009 May;276(10):2657-68. Review.PMID: 19459930 [PubMed - indexed for MEDLINE]Related articles

Serial Analysis of Gene Expression (SAGE): 13 years of application in research.

Anisimov SV.

Curr Pharm Biotechnol. 2008 Oct;9(5):338-50. Review.PMID: 18855686 [PubMed - indexed for MEDLINE]Related articles

Enrichment constrained time-dependent clustering analysis for finding meaningful temporal transcription modules.

Meng J, Gao SJ, Huang Y.

Bioinformatics. 2009 Jun 15;25(12):1521-7. Epub 2009 Apr 7.PMID: 19351618 [PubMed - indexed for MEDLINE]Related articles

Gene expression mining in type 2 diabetes research.

Dunbar DR.

Methods Mol Biol. 2009;560:263-71.PMID: 19504255 [PubMed - indexed for MEDLINE]Related articles

Report on EU-USA workshop: how systems biology can advance cancer research (27 October 2008).

Aebersold R, Auffray C, Baney E, Barillot E, Brazma A, Brett C, Brunak S, Butte A, Califano A, Celis J, Cufer T, Ferrell J, Galas D, Gallahan D, Gatenby R, Goldbeter A, Hace N, Henney A, Hood L, Iyengar R, Jackson V, Kallioniemi O, Klingmüller U, Kolar P, Kolch W, Kyriakopoulou C, Laplace F, Lehrach H, Marcus F, Matrisian L, Nolan G, Pelkmans L, Potti A, Sander C, Seljak M, Singer D, Sorger P, Stunnenberg H, Superti-Furga G, Uhlen M, Vidal M, Weinstein J, Wigle D, Williams M, Wolkenhauer O, Zhivotovsky B, Zinovyev A, Zupan B.

Mol Oncol. 2009 Feb;3(1):9-17. Epub 2008 Dec 9.PMID: 19383362 [PubMed - indexed for MEDLINE]Related articles

Modulated modularity clustering as an exploratory tool for functional genomic inference.

Stone EA, Ayroles JF.

PLoS Genet. 2009 May;5(5):e1000479. Epub 2009 May 8.PMID: 19424432 [PubMed - indexed for MEDLINE]Related articlesFree article

MarVis: a tool for clustering and visualization of metabolic biomarkers.

Kaever A, Lingner T, Feussner K, Göbel C, Feussner I, Meinicke P.

BMC Bioinformatics. 2009 Mar 20;10:92.PMID: 19302701 [PubMed - indexed for MEDLINE]Related articlesFree article

Combining Pareto-optimal clusters using supervised learning for identifying co-expressed genes.

Maulik U, Mukhopadhyay A, Bandyopadhyay S.

BMC Bioinformatics. 2009 Jan 20;10:27.PMID: 19154590 [PubMed - indexed for MEDLINE]Related articlesFree article