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Fast approximate hierarchical clustering using similarity heuristics.

Kull M, Vilo J.

BioData Min. 2008 Sep 22;1(1):9.PMID: 18822115 [PubMed - in process]Related articlesFree article

A modified hyperplane clustering algorithm allows for efficient and accurate clustering of extremely large datasets.

Sharma A, Podolsky R, Zhao J, McIndoe RA.

Bioinformatics. 2009 May 1;25(9):1152-7. Epub 2009 Mar 4.PMID: 19261720 [PubMed - indexed for MEDLINE]Related articlesFree article

Global considerations in hierarchical clustering reveal meaningful patterns in data.

Varshavsky R, Horn D, Linial M.

PLoS One. 2008 May 21;3(5):e2247.PMID: 18493326 [PubMed - indexed for MEDLINE]Related articlesFree article

Ensemble clustering method based on the resampling similarity measure for gene expression data.

Kim SY, Lee JW.

Stat Methods Med Res. 2007 Dec;16(6):539-64. Epub 2007 Aug 14.PMID: 17698931 [PubMed - indexed for MEDLINE]Related articles

K-Boost: a scalable algorithm for high-quality clustering of microarray gene expression data.

Geraci F, Leoncini M, Montangero M, Pellegrini M, Renda ME.

J Comput Biol. 2009 Jun;16(6):859-73.PMID: 19522668 [PubMed - indexed for MEDLINE]Related articles

R/BHC: fast Bayesian hierarchical clustering for microarray data.

Savage RS, Heller K, Xu Y, Ghahramani Z, Truman WM, Grant M, Denby KJ, Wild DL.

BMC Bioinformatics. 2009 Aug 6;10:242.PMID: 19660130 [PubMed - indexed for MEDLINE]Related articlesFree article

PathCluster: a framework for gene set-based hierarchical clustering.

Kim TM, Yim SH, Jeong YB, Jung YC, Chung YJ.

Bioinformatics. 2008 Sep 1;24(17):1957-8. Epub 2008 Jul 15.PMID: 18628289 [PubMed - indexed for MEDLINE]Related articlesFree article

Combining Pareto-optimal clusters using supervised learning for identifying co-expressed genes.

Maulik U, Mukhopadhyay A, Bandyopadhyay S.

BMC Bioinformatics. 2009 Jan 20;10:27.PMID: 19154590 [PubMed - indexed for MEDLINE]Related articlesFree article

GS2: an efficiently computable measure of GO-based similarity of gene sets.

Ruths T, Ruths D, Nakhleh L.

Bioinformatics. 2009 May 1;25(9):1178-84. Epub 2009 Mar 16.PMID: 19289444 [PubMed - indexed for MEDLINE]Related articlesFree article

Computational cluster validation for microarray data analysis: experimental assessment of Clest, Consensus Clustering, Figure of Merit, Gap Statistics and Model Explorer.

Giancarlo R, Scaturro D, Utro F.

BMC Bioinformatics. 2008 Oct 29;9:462.PMID: 18959783 [PubMed - indexed for MEDLINE]Related articlesFree article

Cross-over between discrete and continuous protein structure space: insights into automatic classification and networks of protein structures.

Pascual-García A, Abia D, Ortiz AR, Bastolla U.

PLoS Comput Biol. 2009 Mar;5(3):e1000331. Epub 2009 Mar 27.PMID: 19325884 [PubMed - indexed for MEDLINE]Related articlesFree article

VisHiC--hierarchical functional enrichment analysis of microarray data.

Krushevskaya D, Peterson H, Reimand J, Kull M, Vilo J.

Nucleic Acids Res. 2009 Jul 1;37(Web Server issue):W587-92. Epub 2009 May 29.PMID: 19483095 [PubMed - indexed for MEDLINE]Related articlesFree article

Enrichment constrained time-dependent clustering analysis for finding meaningful temporal transcription modules.

Meng J, Gao SJ, Huang Y.

Bioinformatics. 2009 Jun 15;25(12):1521-7. Epub 2009 Apr 7.PMID: 19351618 [PubMed - indexed for MEDLINE]Related articles

A polynomial time biclustering algorithm for finding approximate expression patterns in gene expression time series.

Madeira SC, Oliveira AL.

Algorithms Mol Biol. 2009 Jun 4;4:8.PMID: 19497096 [PubMed]Related articlesFree article

Breaking the hierarchy--a new cluster selection mechanism for hierarchical clustering methods.

Zahoránszky LA, Katona GY, Hári P, Málnási-Csizmadia A, Zweig KA, Zahoránszky-Köhalmi G.

Algorithms Mol Biol. 2009 Oct 19;4:12.PMID: 19840391 [PubMed]Related articlesFree article

Unsupervised selection of highly coexpressed and noncoexpressed genes using a consensus clustering approach.

Nguyen TT, Nowakowski RS, Androulakis IP.

OMICS. 2009 Jun;13(3):219-37.PMID: 19445647 [PubMed - indexed for MEDLINE]Related articles

NIFTI: an evolutionary approach for finding number of clusters in microarray data.

Jonnalagadda S, Srinivasan R.

BMC Bioinformatics. 2009 Jan 30;10:40.PMID: 19178750 [PubMed - indexed for MEDLINE]Related articlesFree article

Efficient layered density-based clustering of categorical data.

Andreopoulos B, An A, Wang X, Labudde D.

J Biomed Inform. 2009 Apr;42(2):365-76. Epub 2008 Dec 10.PMID: 19111944 [PubMed - indexed for MEDLINE]Related articles

An algorithm to infer similarity among cell types and organisms by examining the most expressed sequences.

Pinto SA, Ortega JM.

Genet Mol Res. 2008 Sep 30;7(3):933-47.PMID: 18949711 [PubMed - indexed for MEDLINE]Related articlesFree article

Network module detection: Affinity search technique with the multi-node topological overlap measure.

Li A, Horvath S.

BMC Res Notes. 2009 Jul 20;2:142.PMID: 19619323 [PubMed]Related articlesFree article