PubMed

Mining tissue specificity, gene connectivity and disease association to reveal a set of genes that modify the action of disease causing genes.

Reverter A, Ingham A, Dalrymple BP.

BioData Min. 2008 Sep 19;1(1):8.PMID: 18822114 [PubMed - in process]Related articlesFree article

A comprehensive functional analysis of tissue specificity of human gene expression.

Dezso Z, Nikolsky Y, Sviridov E, Shi W, Serebriyskaya T, Dosymbekov D, Bugrim A, Rakhmatulin E, Brennan RJ, Guryanov A, Li K, Blake J, Samaha RR, Nikolskaya T.

BMC Biol. 2008 Nov 12;6:49.PMID: 19014478 [PubMed - indexed for MEDLINE]Related articlesFree article

Human gene coexpression landscape: confident network derived from tissue transcriptomic profiles.

Prieto C, Risueño A, Fontanillo C, De las Rivas J.

PLoS One. 2008;3(12):e3911. Epub 2008 Dec 15.PMID: 19081792 [PubMed - indexed for MEDLINE]Related articlesFree article

Expression profiles of switch-like genes accurately classify tissue and infectious disease phenotypes in model-based classification.

Gormley M, Tozeren A.

BMC Bioinformatics. 2008 Nov 17;9:486.PMID: 19014681 [PubMed - indexed for MEDLINE]Related articlesFree article

Knowledge-guided multi-scale independent component analysis for biomarker identification.

Chen L, Xuan J, Wang C, Shih IeM, Wang Y, Zhang Z, Hoffman E, Clarke R.

BMC Bioinformatics. 2008 Oct 6;9:416.PMID: 18837990 [PubMed - indexed for MEDLINE]Related articlesFree article

Identification of temporal association rules from time-series microarray data sets.

Nam H, Lee K, Lee D.

BMC Bioinformatics. 2009 Mar 19;10 Suppl 3:S6.PMID: 19344482 [PubMed - indexed for MEDLINE]Related articlesFree article

A newly-developed community microarray resource for transcriptome profiling in Brassica species enables the confirmation of Brassica-specific expressed sequences.

Trick M, Cheung F, Drou N, Fraser F, Lobenhofer EK, Hurban P, Magusin A, Town CD, Bancroft I.

BMC Plant Biol. 2009 May 8;9:50.PMID: 19426481 [PubMed - indexed for MEDLINE]Related articlesFree article

Linking gene expression and functional network data in human heart failure.

Camargo A, Azuaje F.

PLoS One. 2007 Dec 19;2(12):e1347.PMID: 18094754 [PubMed - indexed for MEDLINE]Related articlesFree article

A statistical framework for differential network analysis from microarray data.

Gill R, Datta S, Datta S.

BMC Bioinformatics. 2010 Feb 19;11(1):95. [Epub ahead of print]PMID: 20170493 [PubMed - as supplied by publisher]Related articlesFree article

Human and mouse switch-like genes share common transcriptional regulatory mechanisms for bimodality.

Ertel A, Tozeren A.

BMC Genomics. 2008 Dec 23;9:628.PMID: 19105848 [PubMed - indexed for MEDLINE]Related articlesFree article

An atlas of human gene expression from massively parallel signature sequencing (MPSS).

Jongeneel CV, Delorenzi M, Iseli C, Zhou D, Haudenschild CD, Khrebtukova I, Kuznetsov D, Stevenson BJ, Strausberg RL, Simpson AJ, Vasicek TJ.

Genome Res. 2005 Jul;15(7):1007-14.PMID: 15998913 [PubMed - indexed for MEDLINE]Related articlesFree article

Genomic analysis of a sexually-selected character: EST sequencing and microarray analysis of eye-antennal imaginal discs in the stalk-eyed fly Teleopsis dalmanni (Diopsidae).

Baker RH, Morgan J, Wang X, Boore JL, Wilkinson GS.

BMC Genomics. 2009 Aug 5;10:361.PMID: 19656405 [PubMed - indexed for MEDLINE]Related articlesFree article

Disease phenocode analysis identifies SNP-guided microRNA maps (MirMaps) associated with human "master" disease genes.

Glinsky GV.

Cell Cycle. 2008 Dec;7(23):3680-94. Epub 2008 Dec 6.PMID: 19029827 [PubMed - indexed for MEDLINE]Related articles

Discovering high-order patterns of gene expression levels.

Wong AK, Au WH, Chan KC.

J Comput Biol. 2008 Jul-Aug;15(6):625-37.PMID: 18631025 [PubMed - indexed for MEDLINE]Related articles

Identification of novel endogenous antisense transcripts by DNA microarray analysis targeting complementary strand of annotated genes.

Numata K, Osada Y, Okada Y, Saito R, Hiraiwa N, Nakaoka H, Yamamoto N, Watanabe K, Okubo K, Kohama C, Kanai A, Abe K, Kiyosawa H.

BMC Genomics. 2009 Aug 22;10:392.PMID: 19698135 [PubMed - indexed for MEDLINE]Related articlesFree article

A module-based analytical strategy to identify novel disease-associated genes shows an inhibitory role for interleukin 7 Receptor in allergic inflammation.

Mobini R, Andersson BA, Erjefält J, Hahn-Zoric M, Langston MA, Perkins AD, Cardell LO, Benson M.

BMC Syst Biol. 2009 Feb 12;3:19.PMID: 19216740 [PubMed - indexed for MEDLINE]Related articlesFree article

Meta-analysis of genome-wide expression patterns associated with behavioral maturation in honey bees.

Adams HA, Southey BR, Robinson GE, Rodriguez-Zas SL.

BMC Genomics. 2008 Oct 24;9:503.PMID: 18950506 [PubMed - indexed for MEDLINE]Related articlesFree article

Unraveling complex temporal associations in cellular systems across multiple time-series microarray datasets.

Li W, Xu M, Zhou XJ.

J Biomed Inform. 2010 Jan 18. [Epub ahead of print]PMID: 20083231 [PubMed - as supplied by publisher]Related articles

Biclustering of microarray data with MOSPO based on crowding distance.

Liu J, Li Z, Hu X, Chen Y.

BMC Bioinformatics. 2009 Apr 29;10 Suppl 4:S9.PMID: 19426457 [PubMed - indexed for MEDLINE]Related articlesFree article

Definition, conservation and epigenetics of housekeeping and tissue-enriched genes.

She X, Rohl CA, Castle JC, Kulkarni AV, Johnson JM, Chen R.

BMC Genomics. 2009 Jun 17;10:269.PMID: 19534766 [PubMed - indexed for MEDLINE]Related articlesFree article