PubMed

Feature context-dependency and complexity-reduction in probability landscapes for integrative genomics.

Lesne A, Benecke A.

Theor Biol Med Model. 2008 Sep 10;5:21.PMID: 18783599 [PubMed - indexed for MEDLINE]Related articlesFree article

Probability landscapes for integrative genomics.

Lesne A, Benecke A.

Theor Biol Med Model. 2008 May 20;5:9.PMID: 18492240 [PubMed - indexed for MEDLINE]Related articlesFree article

Gene set internal coherence in the context of functional profiling.

Montaner D, Minguez P, Al-Shahrour F, Dopazo J.

BMC Genomics. 2009 Apr 27;10:197.PMID: 19397819 [PubMed - indexed for MEDLINE]Related articlesFree article

Knowledge-guided multi-scale independent component analysis for biomarker identification.

Chen L, Xuan J, Wang C, Shih IeM, Wang Y, Zhang Z, Hoffman E, Clarke R.

BMC Bioinformatics. 2008 Oct 6;9:416.PMID: 18837990 [PubMed - indexed for MEDLINE]Related articlesFree article

Gene regulatory network inference: data integration in dynamic models-a review.

Hecker M, Lambeck S, Toepfer S, van Someren E, Guthke R.

Biosystems. 2009 Apr;96(1):86-103. Epub 2008 Dec 27. Review.PMID: 19150482 [PubMed - indexed for MEDLINE]Related articles

Expression genomics and cancer biology.

Liu ET.

Pharmacogenomics. 2004 Dec;5(8):1117-28. Review.PMID: 15584878 [PubMed - indexed for MEDLINE]Related articles

Neuroscience in the era of functional genomics and systems biology.

Geschwind DH, Konopka G.

Nature. 2009 Oct 15;461(7266):908-15. Review.PMID: 19829370 [PubMed - indexed for MEDLINE]Related articles

Knowledge discovery and system biology in molecular medicine: an application on neurodegenerative diseases.

Fattore M, Arrigo P.

In Silico Biol. 2005;5(2):199-208.PMID: 15972015 [PubMed - indexed for MEDLINE]Related articlesFree article

CompMoby: comparative MobyDick for detection of cis-regulatory motifs.

Chaivorapol C, Melton C, Wei G, Yeh RF, Ramalho-Santos M, Blelloch R, Li H.

BMC Bioinformatics. 2008 Oct 27;9:455.PMID: 18950538 [PubMed - indexed for MEDLINE]Related articlesFree article

Prioritizing genes for pathway impact using network analysis.

Chang AN.

Methods Mol Biol. 2009;563:141-56.PMID: 19597784 [PubMed - indexed for MEDLINE]Related articles

Identifying disease-causal genes using Semantic Web-based representation of integrated genomic and phenomic knowledge.

Gudivada RC, Qu XA, Chen J, Jegga AG, Neumann EK, Aronow BJ.

J Biomed Inform. 2008 Oct;41(5):717-29. Epub 2008 Aug 23.PMID: 18755295 [PubMed - indexed for MEDLINE]Related articles

The evolution of signaling complexity suggests a mechanism for reducing the genomic search space in human association studies.

Irizarry KJ, Merriman B, Bahamonde ME, Wong ML, Licinio J.

Mol Psychiatry. 2005 Jan;10(1):14-26. Review.PMID: 15618953 [PubMed - indexed for MEDLINE]Related articles

Evolutionary systems biology: links between gene evolution and function.

Koonin EV, Wolf YI.

Curr Opin Biotechnol. 2006 Oct;17(5):481-7. Epub 2006 Sep 8. Review.PMID: 16962765 [PubMed - indexed for MEDLINE]Related articles

Analysis of Aspergillus nidulans metabolism at the genome-scale.

David H, Ozçelik IS, Hofmann G, Nielsen J.

BMC Genomics. 2008 Apr 11;9:163.PMID: 18405346 [PubMed - indexed for MEDLINE]Related articlesFree article

A systems biology approach for pathway level analysis.

Draghici S, Khatri P, Tarca AL, Amin K, Done A, Voichita C, Georgescu C, Romero R.

Genome Res. 2007 Oct;17(10):1537-45. Epub 2007 Sep 4.PMID: 17785539 [PubMed - indexed for MEDLINE]Related articlesFree article

Building disease-specific drug-protein connectivity maps from molecular interaction networks and PubMed abstracts.

Li J, Zhu X, Chen JY.

PLoS Comput Biol. 2009 Jul;5(7):e1000450. Epub 2009 Jul 31.PMID: 19649302 [PubMed - indexed for MEDLINE]Related articlesFree article

Discovering biological networks from diverse functional genomic data.

Myers CL, Chiriac C, Troyanskaya OG.

Methods Mol Biol. 2009;563:157-75.PMID: 19597785 [PubMed - indexed for MEDLINE]Related articles

Systems biology approach to integrative comparative genomics.

Lin J, Qian J.

Expert Rev Proteomics. 2007 Feb;4(1):107-19. Review.PMID: 17288519 [PubMed - indexed for MEDLINE]Related articles

Human gene coexpression landscape: confident network derived from tissue transcriptomic profiles.

Prieto C, Risueño A, Fontanillo C, De las Rivas J.

PLoS One. 2008;3(12):e3911. Epub 2008 Dec 15.PMID: 19081792 [PubMed - indexed for MEDLINE]Related articlesFree article

Identification of discriminating biomarkers for human disease using integrative network biology.

Dudley JT, Butte AJ.

Pac Symp Biocomput. 2009:27-38.PMID: 19209693 [PubMed - indexed for MEDLINE]Related articlesFree article