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    Results: 1 to 20 of 1292

    1.

    Insights into protein-DNA interactions through structure network analysis.

    Sathyapriya R, Vijayabaskar MS, Vishveshwara S.

    PLoS Comput Biol. 2008 Sep 5;4(9):e1000170.PMID: 18773096 [PubMed - indexed for MEDLINE]Related articlesFree article

    2.

    Oligomeric protein structure networks: insights into protein-protein interactions.

    Brinda KV, Vishveshwara S.

    BMC Bioinformatics. 2005 Dec 10;6:296.PMID: 16336694 [PubMed - indexed for MEDLINE]Related articlesFree article

    3.

    Insights into the quaternary association of proteins through structure graphs: a case study of lectins.

    Brinda KV, Surolia A, Vishveshwara S.

    Biochem J. 2005 Oct 1;391(Pt 1):1-15. Review.PMID: 16173917 [PubMed - indexed for MEDLINE]Related articlesFree article

    4.

    Rearrangement of side-chains in a Zif268 mutant highlights the complexities of zinc finger-DNA recognition.

    Miller JC, Pabo CO.

    J Mol Biol. 2001 Oct 19;313(2):309-15.PMID: 11800559 [PubMed - indexed for MEDLINE]Related articles

    5.

    Interaction of DNA with clusters of amino acids in proteins.

    Sathyapriya R, Vishveshwara S.

    Nucleic Acids Res. 2004 Aug 9;32(14):4109-18. Print 2004.PMID: 15302912 [PubMed - indexed for MEDLINE]Related articlesFree article

    6.

    Computational structural analysis: multiple proteins bound to DNA.

    Tomovic A, Oakeley EJ.

    PLoS One. 2008 Sep 19;3(9):e3243.PMID: 18802470 [PubMed - indexed for MEDLINE]Related articlesFree article

    7.

    Sequence and structural features of carbohydrate binding in proteins and assessment of predictability using a neural network.

    Malik A, Ahmad S.

    BMC Struct Biol. 2007 Jan 3;7:1.PMID: 17201922 [PubMed - indexed for MEDLINE]Related articlesFree article

    8.

    An AP endonuclease 1-DNA polymerase beta complex: theoretical prediction of interacting surfaces.

    Abyzov A, Uzun A, Strauss PR, Ilyin VA.

    PLoS Comput Biol. 2008 Apr 25;4(4):e1000066.PMID: 18437203 [PubMed - indexed for MEDLINE]Related articlesFree article

    9.

    Intra and inter-molecular communications through protein structure network.

    Vishveshwara S, Ghosh A, Hansia P.

    Curr Protein Pept Sci. 2009 Apr;10(2):146-60. Review.PMID: 19355982 [PubMed - indexed for MEDLINE]Related articles

    10.

    Uncovering the structural basis of protein interactions with efficient clustering of 3-D interaction interfaces.

    Aung Z, Tan SH, Ng SK, Tan KL.

    Comput Syst Bioinformatics Conf. 2007;6:287-97.PMID: 17951832 [PubMed - indexed for MEDLINE]Related articlesFree article

    11.

    Insights on protein-DNA recognition by coarse grain modelling.

    Poulain P, Saladin A, Hartmann B, Prévost C.

    J Comput Chem. 2008 Nov 30;29(15):2582-92.PMID: 18478582 [PubMed - indexed for MEDLINE]Related articles

    12.

    Macromolecular recognition.

    Deremble C, Lavery R.

    Curr Opin Struct Biol. 2005 Apr;15(2):171-5. Review.PMID: 15837175 [PubMed - indexed for MEDLINE]Related articles

    13.

    Analysis of homodimeric protein interfaces by graph-spectral methods.

    Brinda KV, Kannan N, Vishveshwara S.

    Protein Eng. 2002 Apr;15(4):265-77.PMID: 11983927 [PubMed - indexed for MEDLINE]Related articlesFree article

    14.

    A network representation of protein structures: implications for protein stability.

    Brinda KV, Vishveshwara S.

    Biophys J. 2005 Dec;89(6):4159-70. Epub 2005 Sep 8.PMID: 16150969 [PubMed - indexed for MEDLINE]Related articlesFree article

    15.

    Integration of bioinformatics and computational biology to understand protein-DNA recognition mechanism.

    Sarai A, Siebers J, Selvaraj S, Gromiha MM, Kono H.

    J Bioinform Comput Biol. 2005 Feb;3(1):169-83.PMID: 15751119 [PubMed - indexed for MEDLINE]Related articles

    16.

    Classification of protein-DNA complexes based on structural descriptors.

    Prabakaran P, Siebers JG, Ahmad S, Gromiha MM, Singarayan MG, Sarai A.

    Structure. 2006 Sep;14(9):1355-67.PMID: 16962967 [PubMed - indexed for MEDLINE]Related articles

    17.

    Computational analysis of hydrogen bonds in protein-RNA complexes for interaction patterns.

    Kim H, Jeong E, Lee SW, Han K.

    FEBS Lett. 2003 Sep 25;552(2-3):231-9.PMID: 14527692 [PubMed - indexed for MEDLINE]Related articles

    18.

    Residue-level prediction of DNA-binding sites and its application on DNA-binding protein predictions.

    Bhardwaj N, Lu H.

    FEBS Lett. 2007 Mar 6;581(5):1058-66. Epub 2007 Feb 7.PMID: 17316627 [PubMed - indexed for MEDLINE]Related articlesFree article

    19.

    Predicting DNA-binding sites of proteins from amino acid sequence.

    Yan C, Terribilini M, Wu F, Jernigan RL, Dobbs D, Honavar V.

    BMC Bioinformatics. 2006 May 19;7:262.PMID: 16712732 [PubMed - indexed for MEDLINE]Related articlesFree article

    20.

    A simple physical model for the prediction and design of protein-DNA interactions.

    Havranek JJ, Duarte CM, Baker D.

    J Mol Biol. 2004 Nov 12;344(1):59-70.PMID: 15504402 [PubMed - indexed for MEDLINE]Related articles

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