PubMed

"Hook"-calibration of GeneChip-microarrays: chip characteristics and expression measures.

Binder H, Krohn K, Preibisch S.

Algorithms Mol Biol. 2008 Aug 29;3:11.PMID: 18759984 [PubMed]Related articlesFree article

"Hook"-calibration of GeneChip-microarrays: theory and algorithm.

Binder H, Preibisch S.

Algorithms Mol Biol. 2008 Aug 29;3:12.PMID: 18759985 [PubMed]Related articlesFree article

Calibration of microarray gene-expression data.

Binder H, Preibisch S, Berger H.

Methods Mol Biol. 2010;576:375-407.PMID: 19882273 [PubMed - indexed for MEDLINE]Related articles

Nonspecific hybridization scaling of microarray expression estimates: a physicochemical approach for chip-to-chip normalization.

Binder H, Brücker J, Burden CJ.

J Phys Chem B. 2009 Mar 5;113(9):2874-95.PMID: 19708217 [PubMed - indexed for MEDLINE]Related articles

Nonspecific Hybridization Scaling of Microarray Expression Estimates: A Physicochemical Approach for Chip-to-Chip Normalization.

Binder H, Brücker J, J Burden C.

J Phys Chem B. 2009 Feb 9. [Epub ahead of print]PMID: 19203216 [PubMed - as supplied by publisher]Related articles

Quality assessment of microarrays: visualization of spatial artifacts and quantitation of regional biases.

Reimers M, Weinstein JN.

BMC Bioinformatics. 2005 Jul 1;6:166.PMID: 15992406 [PubMed - indexed for MEDLINE]Related articlesFree article

Large-scale analysis of antisense transcription in wheat using the Affymetrix GeneChip Wheat Genome Array.

Coram TE, Settles ML, Chen X.

BMC Genomics. 2009 May 29;10:253.PMID: 19480707 [PubMed - indexed for MEDLINE]Related articlesFree article

Mismatch and G-stack modulated probe signals on SNP microarrays.

Binder H, Fasold M, Glomb T.

PLoS One. 2009 Nov 17;4(11):e7862.PMID: 19924253 [PubMed - in process]Related articlesFree article

Alport syndrome. Molecular genetic aspects.

Hertz JM.

Dan Med Bull. 2009 Aug;56(3):105-52.PMID: 19728970 [PubMed - indexed for MEDLINE]Related articles

The removal of multiplicative, systematic bias allows integration of breast cancer gene expression datasets - improving meta-analysis and prediction of prognosis.

Sims AH, Smethurst GJ, Hey Y, Okoniewski MJ, Pepper SD, Howell A, Miller CJ, Clarke RB.

BMC Med Genomics. 2008 Sep 21;1:42.PMID: 18803878 [PubMed]Related articlesFree article

Efficient yeast ChIP-Seq using multiplex short-read DNA sequencing.

Lefrançois P, Euskirchen GM, Auerbach RK, Rozowsky J, Gibson T, Yellman CM, Gerstein M, Snyder M.

BMC Genomics. 2009 Jan 21;10:37.PMID: 19159457 [PubMed - indexed for MEDLINE]Related articlesFree article

Transcript-specific expression profiles derived from sequence-based analysis of standard microarrays.

Moll AG, Lindenmeyer MT, Kretzler M, Nelson PJ, Zimmer R, Cohen CD.

PLoS One. 2009;4(3):e4702. Epub 2009 Mar 11.PMID: 19277110 [PubMed - indexed for MEDLINE]Related articlesFree article

Statistical Metrics for Quality Assessment of High-Density Tiling Array Data.

Tang H, Therneau TM.

Biometrics. 2009 Jul 23. [Epub ahead of print]PMID: 19645697 [PubMed - as supplied by publisher]Related articles

Gene expression profiling of whole blood: comparison of target preparation methods for accurate and reproducible microarray analysis.

Vartanian K, Slottke R, Johnstone T, Casale A, Planck SR, Choi D, Smith JR, Rosenbaum JT, Harrington CA.

BMC Genomics. 2009 Jan 5;10:2.PMID: 19123946 [PubMed - indexed for MEDLINE]Related articlesFree article

Comparison of sequence-dependent tiling array normalization approaches.

Chung HR, Vingron M.

BMC Bioinformatics. 2009 Jun 30;10:204.PMID: 19566918 [PubMed - indexed for MEDLINE]Related articlesFree article

Application of hybridization control probe to increase accuracy on ligation detection or minisequencing diagnostic microarrays.

Ritari J, Paulin L, Hultman J, Auvinen P.

BMC Res Notes. 2009 Dec 14;2:249.PMID: 20003444 [PubMed - in process]Related articlesFree article

Thermodynamic scaling behavior in genechips.

Ferrantini A, Allemeersch J, Van Hummelen P, Carlon E.

BMC Bioinformatics. 2009 Jan 6;10:3.PMID: 19123958 [PubMed - indexed for MEDLINE]Related articlesFree article

ChIP-chip to analyze the binding of replication proteins to chromatin using oligonucleotide DNA microarrays.

Viggiani CJ, Aparicio JG, Aparicio OM.

Methods Mol Biol. 2009;521:255-78.PMID: 19563111 [PubMed - indexed for MEDLINE]Related articles

SiPaGene: A new repository for instant online retrieval, sharing and meta-analyses of GeneChip expression data.

Menssen A, Edinger G, Grün JR, Haase U, Baumgrass R, Grützkau A, Radbruch A, Burmester GR, Häupl T.

BMC Genomics. 2009 Mar 5;10:98.PMID: 19265543 [PubMed - indexed for MEDLINE]Related articlesFree article

Statistical analysis of adsorption models for oligonucleotide microarrays.

Burden CJ, Pittelkow YE, Wilson SR.

Stat Appl Genet Mol Biol. 2004;3:Article35. Epub 2004 Dec 9.PMID: 16646815 [PubMed]Related articlesFree article