PubMed

Analysis of the mouse embryonic stem cell regulatory networks obtained by ChIP-chip and ChIP-PET.

Mathur D, Danford TW, Boyer LA, Young RA, Gifford DK, Jaenisch R.

Genome Biol. 2008;9(8):R126. Epub 2008 Aug 13.PMID: 18700969 [PubMed - indexed for MEDLINE]Related articlesFree article

Conserved long noncoding RNAs transcriptionally regulated by Oct4 and Nanog modulate pluripotency in mouse embryonic stem cells.

Sheik Mohamed J, Gaughwin PM, Lim B, Robson P, Lipovich L.

RNA. 2010 Feb;16(2):324-37. Epub 2009 Dec 21.PMID: 20026622 [PubMed - indexed for MEDLINE]Related articles

Genome-wide analysis reveals Sall4 to be a major regulator of pluripotency in murine-embryonic stem cells.

Yang J, Chai L, Fowles TC, Alipio Z, Xu D, Fink LM, Ward DC, Ma Y.

Proc Natl Acad Sci U S A. 2008 Dec 16;105(50):19756-61. Epub 2008 Dec 5.PMID: 19060217 [PubMed - indexed for MEDLINE]Related articlesFree article

Identification of Pou5f1, Sox2, and Nanog downstream target genes with statistical confidence by applying a novel algorithm to time course microarray and genome-wide chromatin immunoprecipitation data.

Sharov AA, Masui S, Sharova LV, Piao Y, Aiba K, Matoba R, Xin L, Niwa H, Ko MS.

BMC Genomics. 2008 Jun 3;9:269.PMID: 18522731 [PubMed - indexed for MEDLINE]Related articlesFree article

The Oct4 and Nanog transcription network regulates pluripotency in mouse embryonic stem cells.

Loh YH, Wu Q, Chew JL, Vega VB, Zhang W, Chen X, Bourque G, George J, Leong B, Liu J, Wong KY, Sung KW, Lee CW, Zhao XD, Chiu KP, Lipovich L, Kuznetsov VA, Robson P, Stanton LW, Wei CL, Ruan Y, Lim B, Ng HH.

Nat Genet. 2006 Apr;38(4):431-40. Epub 2006 Mar 5.PMID: 16518401 [PubMed - indexed for MEDLINE]Related articles

Analysis of Oct4-dependent transcriptional networks regulating self-renewal and pluripotency in human embryonic stem cells.

Babaie Y, Herwig R, Greber B, Brink TC, Wruck W, Groth D, Lehrach H, Burdon T, Adjaye J.

Stem Cells. 2007 Feb;25(2):500-10. Epub 2006 Oct 26.PMID: 17068183 [PubMed - indexed for MEDLINE]Related articlesFree article

In silico identification of a core regulatory network of OCT4 in human embryonic stem cells using an integrated approach.

Chavez L, Bais AS, Vingron M, Lehrach H, Adjaye J, Herwig R.

BMC Genomics. 2009 Jul 15;10:314.PMID: 19604364 [PubMed - indexed for MEDLINE]Related articlesFree article

Stat3 and c-Myc genome-wide promoter occupancy in embryonic stem cells.

Kidder BL, Yang J, Palmer S.

PLoS One. 2008;3(12):e3932. Epub 2008 Dec 11.PMID: 19079543 [PubMed - indexed for MEDLINE]Related articlesFree article

Tcf3 is an integral component of the core regulatory circuitry of embryonic stem cells.

Cole MF, Johnstone SE, Newman JJ, Kagey MH, Young RA.

Genes Dev. 2008 Mar 15;22(6):746-55.PMID: 18347094 [PubMed - indexed for MEDLINE]Related articlesFree article

Transcriptional regulation of nanog by OCT4 and SOX2.

Rodda DJ, Chew JL, Lim LH, Loh YH, Wang B, Ng HH, Robson P.

J Biol Chem. 2005 Jul 1;280(26):24731-7. Epub 2005 Apr 27.PMID: 15860457 [PubMed - indexed for MEDLINE]Related articlesFree article

Zic3 is required for maintenance of pluripotency in embryonic stem cells.

Lim LS, Loh YH, Zhang W, Li Y, Chen X, Wang Y, Bakre M, Ng HH, Stanton LW.

Mol Biol Cell. 2007 Apr;18(4):1348-58. Epub 2007 Jan 31.PMID: 17267691 [PubMed - indexed for MEDLINE]Related articlesFree article

Core transcriptional regulatory circuitry in human embryonic stem cells.

Boyer LA, Lee TI, Cole MF, Johnstone SE, Levine SS, Zucker JP, Guenther MG, Kumar RM, Murray HL, Jenner RG, Gifford DK, Melton DA, Jaenisch R, Young RA.

Cell. 2005 Sep 23;122(6):947-56.PMID: 16153702 [PubMed - indexed for MEDLINE]Related articles

Zfp143 regulates Nanog through modulation of Oct4 binding.

Chen X, Fang F, Liou YC, Ng HH.

Stem Cells. 2008 Nov;26(11):2759-67. Epub 2008 Aug 7.PMID: 18687992 [PubMed - indexed for MEDLINE]Related articlesFree article

Transcriptional regulatory networks in embryonic stem cells.

Chen X, Vega VB, Ng HH.

Cold Spring Harb Symp Quant Biol. 2008;73:203-9. Epub 2008 Nov 6. Review.PMID: 19022762 [PubMed - indexed for MEDLINE]Related articles

Orphan nuclear receptor GCNF is required for the repression of pluripotency genes during retinoic acid-induced embryonic stem cell differentiation.

Gu P, LeMenuet D, Chung AC, Mancini M, Wheeler DA, Cooney AJ.

Mol Cell Biol. 2005 Oct;25(19):8507-19.PMID: 16166633 [PubMed - indexed for MEDLINE]Related articlesFree article

Esrrb activates Oct4 transcription and sustains self-renewal and pluripotency in embryonic stem cells.

Zhang X, Zhang J, Wang T, Esteban MA, Pei D.

J Biol Chem. 2008 Dec 19;283(51):35825-33. Epub 2008 Oct 28.PMID: 18957414 [PubMed - indexed for MEDLINE]Related articlesFree article

Nanog and Oct4 associate with unique transcriptional repression complexes in embryonic stem cells.

Liang J, Wan M, Zhang Y, Gu P, Xin H, Jung SY, Qin J, Wong J, Cooney AJ, Liu D, Songyang Z.

Nat Cell Biol. 2008 Jun;10(6):731-9. Epub 2008 May 4.PMID: 18454139 [PubMed - indexed for MEDLINE]Related articles

Yamanaka factors critically regulate the developmental signaling network in mouse embryonic stem cells.

Liu X, Huang J, Chen T, Wang Y, Xin S, Li J, Pei G, Kang J.

Cell Res. 2008 Dec;18(12):1177-89.PMID: 19030024 [PubMed - indexed for MEDLINE]Related articles

Transcriptional dynamics of the embryonic stem cell switch.

Chickarmane V, Troein C, Nuber UA, Sauro HM, Peterson C.

PLoS Comput Biol. 2006 Sep 15;2(9):e123. Epub 2006 Jul 31.PMID: 16978048 [PubMed - indexed for MEDLINE]Related articlesFree article

Three LIF-dependent signatures and gene clusters with atypical expression profiles, identified by transcriptome studies in mouse ES cells and early derivatives.

Trouillas M, Saucourt C, Guillotin B, Gauthereau X, Ding L, Buchholz F, Doss MX, Sachinidis A, Hescheler J, Hummel O, Huebner N, Kolde R, Vilo J, Schulz H, Boeuf H.

BMC Genomics. 2009 Feb 9;10:73.PMID: 19203379 [PubMed - indexed for MEDLINE]Related articlesFree article