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Evaluation of genomic island predictors using a comparative genomics approach.

Langille MG, Hsiao WW, Brinkman FS.

BMC Bioinformatics. 2008 Aug 5;9:329.PMID: 18680607 [PubMed - indexed for MEDLINE]Related articlesFree article

IslandViewer: an integrated interface for computational identification and visualization of genomic islands.

Langille MG, Brinkman FS.

Bioinformatics. 2009 Mar 1;25(5):664-5. Epub 2009 Jan 16.PMID: 19151094 [PubMed - indexed for MEDLINE]Related articlesFree article

Score-based prediction of genomic islands in prokaryotic genomes using hidden Markov models.

Waack S, Keller O, Asper R, Brodag T, Damm C, Fricke WF, Surovcik K, Meinicke P, Merkl R.

BMC Bioinformatics. 2006 Mar 16;7:142.PMID: 16542435 [PubMed - indexed for MEDLINE]Related articlesFree article

A computational approach for identifying pathogenicity islands in prokaryotic genomes.

Yoon SH, Hur CG, Kang HY, Kim YH, Oh TK, Kim JF.

BMC Bioinformatics. 2005 Jul 21;6:184.PMID: 16033657 [PubMed - indexed for MEDLINE]Related articlesFree article

An acquisition account of genomic islands based on genome signature comparisons.

van Passel MW, Bart A, Thygesen HH, Luyf AC, van Kampen AH, van der Ende A.

BMC Genomics. 2005 Nov 18;6:163.PMID: 16297239 [PubMed - indexed for MEDLINE]Related articlesFree article

SIGI: score-based identification of genomic islands.

Merkl R.

BMC Bioinformatics. 2004 Mar 3;5:22.PMID: 15113412 [PubMed - indexed for MEDLINE]Related articlesFree article

A novel strategy for the identification of genomic islands by comparative analysis of the contents and contexts of tRNA sites in closely related bacteria.

Ou HY, Chen LL, Lonnen J, Chaudhuri RR, Thani AB, Smith R, Garton NJ, Hinton J, Pallen M, Barer MR, Rajakumar K.

Nucleic Acids Res. 2006 Jan 9;34(1):e3.PMID: 16414954 [PubMed - indexed for MEDLINE]Related articlesFree article

Detection of genomic islands via segmental genome heterogeneity.

Arvey AJ, Azad RK, Raval A, Lawrence JG.

Nucleic Acids Res. 2009 Sep;37(16):5255-66. Epub 2009 Jul 9.PMID: 19589805 [PubMed - indexed for MEDLINE]Related articlesFree article

n-Gram characterization of genomic islands in bacterial genomes.

Pavlović-Lazetić GM, Mitić NS, Beljanski MV.

Comput Methods Programs Biomed. 2009 Mar;93(3):241-56. Epub 2008 Dec 19.PMID: 19101056 [PubMed - indexed for MEDLINE]Related articles

Evidence of a large novel gene pool associated with prokaryotic genomic islands.

Hsiao WW, Ung K, Aeschliman D, Bryan J, Finlay BB, Brinkman FS.

PLoS Genet. 2005 Nov;1(5):e62. Epub 2005 Nov 18.PMID: 16299586 [PubMed - indexed for MEDLINE]Related articlesFree article

On detection and assessment of statistical significance of Genomic Islands.

Chatterjee R, Chaudhuri K, Chaudhuri P.

BMC Genomics. 2008 Apr 1;9:150.PMID: 18380895 [PubMed - indexed for MEDLINE]Related articlesFree article

Comparative genomics approaches to study organism similarities and differences.

Wei L, Liu Y, Dubchak I, Shon J, Park J.

J Biomed Inform. 2002 Apr;35(2):142-50. Review.PMID: 12474427 [PubMed - indexed for MEDLINE]Related articles

Comparative genomics tools applied to bioterrorism defence.

Slezak T, Kuczmarski T, Ott L, Torres C, Medeiros D, Smith J, Truitt B, Mulakken N, Lam M, Vitalis E, Zemla A, Zhou CE, Gardner S.

Brief Bioinform. 2003 Jun;4(2):133-49.PMID: 12846395 [PubMed - indexed for MEDLINE]Related articlesFree article

Burkholderia pseudomallei genome plasticity associated with genomic island variation.

Tumapa S, Holden MT, Vesaratchavest M, Wuthiekanun V, Limmathurotsakul D, Chierakul W, Feil EJ, Currie BJ, Day NP, Nierman WC, Peacock SJ.

BMC Genomics. 2008 Apr 25;9:190.PMID: 18439288 [PubMed - indexed for MEDLINE]Related articlesFree article

Resolving the structural features of genomic islands: a machine learning approach.

Vernikos GS, Parkhill J.

Genome Res. 2008 Feb;18(2):331-42. Epub 2007 Dec 10.PMID: 18071028 [PubMed - indexed for MEDLINE]Related articlesFree article

MobilomeFINDER: web-based tools for in silico and experimental discovery of bacterial genomic islands.

Ou HY, He X, Harrison EM, Kulasekara BR, Thani AB, Kadioglu A, Lory S, Hinton JC, Barer MR, Deng Z, Rajakumar K.

Nucleic Acids Res. 2007 Jul;35(Web Server issue):W97-W104. Epub 2007 May 30.PMID: 17537813 [PubMed - indexed for MEDLINE]Related articlesFree article

Identification of genomic islands in the genome of Bacillus cereus by comparative analysis with Bacillus anthracis.

Zhang R, Zhang CT.

Physiol Genomics. 2003 Dec 16;16(1):19-23.PMID: 14600214 [PubMed - indexed for MEDLINE]Related articles

PredictBias: a server for the identification of genomic and pathogenicity islands in prokaryotes.

Pundhir S, Vijayvargiya H, Kumar A.

In Silico Biol. 2008;8(3-4):223-34.PMID: 19032158 [PubMed - indexed for MEDLINE]Related articlesFree article

GC-Profile: a web-based tool for visualizing and analyzing the variation of GC content in genomic sequences.

Gao F, Zhang CT.

Nucleic Acids Res. 2006 Jul 1;34(Web Server issue):W686-91.PMID: 16845098 [PubMed - indexed for MEDLINE]Related articlesFree article

A universally applicable method of operon map prediction on minimally annotated genomes using conserved genomic context.

Edwards MT, Rison SC, Stoker NG, Wernisch L.

Nucleic Acids Res. 2005 Jun 7;33(10):3253-62. Print 2005.PMID: 15942028 [PubMed - indexed for MEDLINE]Related articlesFree article