PubMed

Sequence conservation and combinatorial complexity of Drosophila neural precursor cell enhancers.

Brody T, Rasband W, Baler K, Kuzin A, Kundu M, Odenwald WF.

BMC Genomics. 2008 Aug 1;9:371.PMID: 18673565 [PubMed - indexed for MEDLINE]Related articlesFree article

Conserved sequence block clustering and flanking inter-cluster flexibility delineate enhancers that regulate nerfin-1 expression during Drosophila CNS development.

Kuzin A, Kundu M, Ekatomatis A, Brody T, Odenwald WF.

Gene Expr Patterns. 2009 Feb;9(2):65-72. Epub 2008 Nov 24.PMID: 19056518 [PubMed - indexed for MEDLINE]Related articles

Computational identification of developmental enhancers: conservation and function of transcription factor binding-site clusters in Drosophila melanogaster and Drosophila pseudoobscura.

Berman BP, Pfeiffer BD, Laverty TR, Salzberg SL, Rubin GM, Eisen MB, Celniker SE.

Genome Biol. 2004;5(9):R61. Epub 2004 Aug 20.PMID: 15345045 [PubMed - indexed for MEDLINE]Related articlesFree article

Sepsid even-skipped enhancers are functionally conserved in Drosophila despite lack of sequence conservation.

Hare EE, Peterson BK, Iyer VN, Meier R, Eisen MB.

PLoS Genet. 2008 Jun 27;4(6):e1000106.PMID: 18584029 [PubMed - indexed for MEDLINE]Related articlesFree article

cis-Decoder discovers constellations of conserved DNA sequences shared among tissue-specific enhancers.

Brody T, Rasband W, Baler K, Kuzin A, Kundu M, Odenwald WF.

Genome Biol. 2007;8(5):R75.PMID: 17490485 [PubMed - indexed for MEDLINE]Related articlesFree article

Functional analysis of eve stripe 2 enhancer evolution in Drosophila: rules governing conservation and change.

Ludwig MZ, Patel NH, Kreitman M.

Development. 1998 Mar;125(5):949-58.PMID: 9449677 [PubMed - indexed for MEDLINE]Related articlesFree article

Computation-based discovery of related transcriptional regulatory modules and motifs using an experimentally validated combinatorial model.

Halfon MS, Grad Y, Church GM, Michelson AM.

Genome Res. 2002 Jul;12(7):1019-28.PMID: 12097338 [PubMed - indexed for MEDLINE]Related articlesFree article

Quantitative analysis of binding motifs mediating diverse spatial readouts of the Dorsal gradient in the Drosophila embryo.

Papatsenko D, Levine M.

Proc Natl Acad Sci U S A. 2005 Apr 5;102(14):4966-71. Epub 2005 Mar 28.PMID: 15795372 [PubMed - indexed for MEDLINE]Related articlesFree article

Regulatory and coding regions of the segmentation gene hunchback are functionally conserved between Drosophila virilis and Drosophila melanogaster.

Lukowitz W, Schröder C, Glaser G, Hülskamp M, Tautz D.

Mech Dev. 1994 Feb;45(2):105-15.PMID: 8199047 [PubMed - indexed for MEDLINE]Related articles

EVOPRINTER, a multigenomic comparative tool for rapid identification of functionally important DNA.

Odenwald WF, Rasband W, Kuzin A, Brody T.

Proc Natl Acad Sci U S A. 2005 Oct 11;102(41):14700-5. Epub 2005 Oct 3.PMID: 16203978 [PubMed - indexed for MEDLINE]Related articlesFree article

Hormonal regulation of the E75 gene in Drosophila: identifying functional regulatory elements through computational and biological analysis.

Bernardo TJ, Dubrovskaya VA, Jannat H, Maughan B, Dubrovsky EB.

J Mol Biol. 2009 Apr 10;387(4):794-808.PMID: 19340940 [PubMed - indexed for MEDLINE]Related articles

Expression of zebrafish pax6b in pancreas is regulated by two enhancers containing highly conserved cis-elements bound by PDX1, PBX and PREP factors.

Delporte FM, Pasque V, Devos N, Manfroid I, Voz ML, Motte P, Biemar F, Martial JA, Peers B.

BMC Dev Biol. 2008 May 16;8:53.PMID: 18485195 [PubMed - indexed for MEDLINE]Related articlesFree article

Functional tests of enhancer conservation between distantly related species.

Ruvinsky I, Ruvkun G.

Development. 2003 Nov;130(21):5133-42. Epub 2003 Aug 27.PMID: 12944426 [PubMed - indexed for MEDLINE]Related articlesFree article

A regulatory element of the empty spiracles homeobox gene is composed of three distinct conserved regions that bind regulatory proteins.

Taylor HS.

Mol Reprod Dev. 1998 Mar;49(3):246-53.PMID: 9491376 [PubMed - indexed for MEDLINE]Related articles

Dual regulation and redundant function of two eye-specific enhancers of the Drosophila retinal determination gene dachshund.

Pappu KS, Ostrin EJ, Middlebrooks BW, Sili BT, Chen R, Atkins MR, Gibbs R, Mardon G.

Development. 2005 Jun;132(12):2895-905.PMID: 15930118 [PubMed - indexed for MEDLINE]Related articlesFree article

Specificity of CNS and PNS regulatory subelements comprising pan-neural enhancers of the deadpan and scratch genes is achieved by repression.

Emery JF, Bier E.

Development. 1995 Nov;121(11):3549-60.PMID: 8582269 [PubMed - indexed for MEDLINE]Related articlesFree article

Rapid detection and curation of conserved DNA via enhanced-BLAT and EvoPrinterHD analysis.

Yavatkar AS, Lin Y, Ross J, Fann Y, Brody T, Odenwald WF.

BMC Genomics. 2008 Feb 28;9:106.PMID: 18307801 [PubMed - indexed for MEDLINE]Related articlesFree article

Evolution of developmental genes: molecular microevolution of enhancer sequences at the Ubx locus in Drosophila and its impact on developmental phenotypes.

Phinchongsakuldit J, MacArthur S, Brookfield JF.

Mol Biol Evol. 2004 Feb;21(2):348-63. Epub 2003 Dec 5.PMID: 14660693 [PubMed - indexed for MEDLINE]Related articlesFree article

The words of the regulatory code are arranged in a variable manner in highly conserved enhancers.

Rastegar S, Hess I, Dickmeis T, Nicod JC, Ertzer R, Hadzhiev Y, Thies WG, Scherer G, Strähle U.

Dev Biol. 2008 Jun 15;318(2):366-77. Epub 2008 Apr 4.PMID: 18455719 [PubMed - indexed for MEDLINE]Related articles

The abdominal-B promoter tethering element mediates promoter-enhancer specificity at the Drosophila bithorax complex.

Akbari OS, Schiller BJ, Goetz SE, Ho MC, Bae E, Drewell RA.

Fly (Austin). 2007 Nov-Dec;1(6):337-9.PMID: 18504507 [PubMed - indexed for MEDLINE]Related articlesFree article