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Does codon bias have an evolutionary origin?

Biro JC.

Theor Biol Med Model. 2008 Jul 30;5:16.PMID: 18667081 [PubMed - indexed for MEDLINE]Related articlesFree article

Codon usage in twelve species of Drosophila.

Vicario S, Moriyama EN, Powell JR.

BMC Evol Biol. 2007 Nov 15;7:226.PMID: 18005411 [PubMed - indexed for MEDLINE]Related articlesFree article

Molecular evolution of synonymous codon usage in Populus.

Ingvarsson PK.

BMC Evol Biol. 2008 Nov 4;8:307.PMID: 18983655 [PubMed - indexed for MEDLINE]Related articlesFree article

The effective number of codons for individual amino acids: some codons are more optimal than others.

Fuglsang A.

Gene. 2003 Nov 27;320:185-90.PMID: 14597402 [PubMed - indexed for MEDLINE]Related articles

Selection on codon usage for error minimization at the protein level.

Archetti M.

J Mol Evol. 2004 Sep;59(3):400-15.PMID: 15553093 [PubMed - indexed for MEDLINE]Related articles

The action of selection on codon bias in the human genome is related to frequency, complexity, and chronology of amino acids.

Kotlar D, Lavner Y.

BMC Genomics. 2006 Apr 3;7:67.PMID: 16584540 [PubMed - indexed for MEDLINE]Related articlesFree article

Nonrandom intragenic variations in patterns of codon bias implicate a sequential interplay between transitional genetic drift and functional amino acid selection.

Lin K, Tan SB, Kolatkar PR, Epstein RJ.

J Mol Evol. 2003 Nov;57(5):538-45.PMID: 14738312 [PubMed - indexed for MEDLINE]Related articles

Codon usage bias and tRNA abundance in Drosophila.

Moriyama EN, Powell JR.

J Mol Evol. 1997 Nov;45(5):514-23.PMID: 9342399 [PubMed - indexed for MEDLINE]Related articles

Factors influencing the synonymous codon and amino acid usage bias in AT-rich Pseudomonas aeruginosa phage PhiKZ.

Sau K, Sau S, Mandal SC, Ghosh TC.

Acta Biochim Biophys Sin (Shanghai). 2005 Sep;37(9):625-33.PMID: 16143818 [PubMed - indexed for MEDLINE]Related articlesFree article

A simple model based on mutation and selection explains trends in codon and amino-acid usage and GC composition within and across genomes.

Knight RD, Freeland SJ, Landweber LF.

Genome Biol. 2001;2(4):RESEARCH0010. Epub 2001 Mar 22.PMID: 11305938 [PubMed - indexed for MEDLINE]Related articlesFree article

Evolutionary patterns of codon usage in the chloroplast gene rbcL.

Wall DP, Herbeck JT.

J Mol Evol. 2003 Jun;56(6):673-88; discussion 689-90.PMID: 12911031 [PubMed - indexed for MEDLINE]Related articles

Evolution of codon usage bias in Drosophila.

Powell JR, Moriyama EN.

Proc Natl Acad Sci U S A. 1997 Jul 22;94(15):7784-90.PMID: 9223264 [PubMed - indexed for MEDLINE]Related articlesFree article

The genome of Campylobacter jejuni: codon and amino acid usage.

Fuglsang A.

APMIS. 2003 Jun;111(6):605-18.PMID: 12969016 [PubMed - indexed for MEDLINE]Related articles

Comparison of codon usage and tRNAs in mitochondrial genomes of Candida species.

Kamatani T, Yamamoto T.

Biosystems. 2007 Sep-Oct;90(2):362-70. Epub 2006 Oct 5.PMID: 17123703 [PubMed - indexed for MEDLINE]Related articles

A mechanism for the association of amino acids with their codons and the origin of the genetic code.

Copley SD, Smith E, Morowitz HJ.

Proc Natl Acad Sci U S A. 2005 Mar 22;102(12):4442-7. Epub 2005 Mar 11.PMID: 15764708 [PubMed - indexed for MEDLINE]Related articlesFree article

The evolution of biased codon and amino acid usage in nematode genomes.

Cutter AD, Wasmuth JD, Blaxter ML.

Mol Biol Evol. 2006 Dec;23(12):2303-15. Epub 2006 Aug 25.PMID: 16936139 [PubMed - indexed for MEDLINE]Related articlesFree article

A hardware interpretation of the evolution of the genetic code.

Soto MA, Tohá CJ.

Biosystems. 1985;18(2):209-15.PMID: 4074855 [PubMed - indexed for MEDLINE]Related articles

The 'weighted sum of relative entropy': a new index for synonymous codon usage bias.

Suzuki H, Saito R, Tomita M.

Gene. 2004 Jun 23;335:19-23.PMID: 15194186 [PubMed - indexed for MEDLINE]Related articles

The nonrandom location of synonymous codons suggests that reading frame-independent forces have patterned codon preferences.

Antezana MA, Kreitman M.

J Mol Evol. 1999 Jul;49(1):36-43.PMID: 10368432 [PubMed - indexed for MEDLINE]Related articles

Genetic code development by stop codon takeover.

Lehman N, Jukes TH.

J Theor Biol. 1988 Nov 21;135(2):203-14.PMID: 2477643 [PubMed - indexed for MEDLINE]Related articles