PubMed

GBParsy: a GenBank flatfile parser library with high speed.

Lee TH, Kim YK, Nahm BH.

BMC Bioinformatics. 2008 Jul 25;9:321.PMID: 18652706 [PubMed - indexed for MEDLINE]Related articlesFree article

Zerg: a very fast BLAST parser library.

Paquola AC, Machado AA, Reis EM, Da Silva AM, Verjovski-Almeida S.

Bioinformatics. 2003 May 22;19(8):1035-6.PMID: 12761068 [PubMed - indexed for MEDLINE]Related articlesFree article

Lightweight genome viewer: portable software for browsing genomics data in its chromosomal context.

Faith JJ, Olson AJ, Gardner TS, Sachidanandam R.

BMC Bioinformatics. 2007 Sep 18;8:344.PMID: 17877794 [PubMed - indexed for MEDLINE]Related articlesFree article

PET-Tool: a software suite for comprehensive processing and managing of Paired-End diTag (PET) sequence data.

Chiu KP, Wong CH, Chen Q, Ariyaratne P, Ooi HS, Wei CL, Sung WK, Ruan Y.

BMC Bioinformatics. 2006 Aug 25;7:390.PMID: 16934139 [PubMed - indexed for MEDLINE]Related articlesFree article

A computer program for the estimation of protein and nucleic acid sequence diversity in random point mutagenesis libraries.

Volles MJ, Lansbury PT Jr.

Nucleic Acids Res. 2005 Jun 29;33(11):3667-77. Print 2005.PMID: 15990391 [PubMed - indexed for MEDLINE]Related articlesFree article

SPLICE, a computer program for automated extraction of information from GenBank sequence entries.

Dubnick M, Mount DW.

Comput Appl Biosci. 1990 Oct;6(4):343-6.PMID: 2257494 [PubMed - indexed for MEDLINE]Related articles

Fast parsers for Entrez Gene.

Liu M, Grigoriev A.

Bioinformatics. 2005 Jul 15;21(14):3189-90. Epub 2005 May 6.PMID: 15879451 [PubMed - indexed for MEDLINE]Related articlesFree article

Recognition of human genes by stochastic parsing.

Asai K, Itou K, Ueno Y, Yada T.

Pac Symp Biocomput. 1998:228-39.PMID: 9697185 [PubMed - indexed for MEDLINE]Related articlesFree article

Processing sequence annotation data using the Lua programming language.

Ueno Y, Arita M, Kumagai T, Asai K.

Genome Inform. 2003;14:154-63.PMID: 15706530 [PubMed - indexed for MEDLINE]Related articles

Improving sequence variant descriptions in mutation databases and literature using the Mutalyzer sequence variation nomenclature checker.

Wildeman M, van Ophuizen E, den Dunnen JT, Taschner PE.

Hum Mutat. 2008 Jan;29(1):6-13.PMID: 18000842 [PubMed - indexed for MEDLINE]Related articles

Sequence assembly with CAFTOOLS.

Dear S, Durbin R, Hillier L, Marth G, Thierry-Mieg J, Mott R.

Genome Res. 1998 Mar;8(3):260-7.PMID: 9521929 [PubMed - indexed for MEDLINE]Related articlesFree article

A comparison of common programming languages used in bioinformatics.

Fourment M, Gillings MR.

BMC Bioinformatics. 2008 Feb 5;9:82.PMID: 18251993 [PubMed - indexed for MEDLINE]Related articlesFree article

SNPFile--a software library and file format for large scale association mapping and population genetics studies.

Nielsen J, Mailund T.

BMC Bioinformatics. 2008 Dec 8;9:526.PMID: 19063732 [PubMed - indexed for MEDLINE]Related articlesFree article

OMSSA Parser: an open-source library to parse and extract data from OMSSA MS/MS search results.

Barsnes H, Huber S, Sickmann A, Eidhammer I, Martens L.

Proteomics. 2009 Jul;9(14):3772-4.PMID: 19639591 [PubMed - indexed for MEDLINE]Related articles

Viewing and annotating sequence data with Artemis.

Berriman M, Rutherford K.

Brief Bioinform. 2003 Jun;4(2):124-32.PMID: 12846394 [PubMed - indexed for MEDLINE]Related articlesFree article

Batch Blast Extractor: an automated blastx parser application.

Pirooznia M, Perkins EJ, Deng Y.

BMC Genomics. 2008 Sep 16;9 Suppl 2:S10.PMID: 18831775 [PubMed - indexed for MEDLINE]Related articlesFree article

Time and memory efficient algorithm for extracting palindromic and repetitive subsequences in nucleic acid sequences.

Tsunoda T, Fukagawa M, Takagi T.

Pac Symp Biocomput. 1999:202-13.PMID: 10380198 [PubMed - indexed for MEDLINE]Related articlesFree article

GenBank.

Benson DA, Karsch-Mizrachi I, Lipman DJ, Ostell J, Wheeler DL.

Nucleic Acids Res. 2007 Jan;35(Database issue):D21-5.PMID: 17202161 [PubMed - indexed for MEDLINE]Related articlesFree article

GenBank.

Benson DA, Karsch-Mizrachi I, Lipman DJ, Ostell J, Wheeler DL.

Nucleic Acids Res. 2008 Jan;36(Database issue):D25-30. Epub 2007 Dec 11.PMID: 18073190 [PubMed - indexed for MEDLINE]Related articlesFree article

ZTR: a new format for DNA sequence trace data.

Bonfield JK, Staden R.

Bioinformatics. 2002 Jan;18(1):3-10.PMID: 11836205 [PubMed - indexed for MEDLINE]Related articlesFree article