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Articulation of three core metabolic processes in Arabidopsis: fatty acid biosynthesis, leucine catabolism and starch metabolism.

Mentzen WI, Peng J, Ransom N, Nikolau BJ, Wurtele ES.

BMC Plant Biol. 2008 Jul 11;8:76.PMID: 18616834 [PubMed - indexed for MEDLINE]Related articlesFree article

The transcript and metabolite networks affected by the two clades of Arabidopsis glucosinolate biosynthesis regulators.

Malitsky S, Blum E, Less H, Venger I, Elbaz M, Morin S, Eshed Y, Aharoni A.

Plant Physiol. 2008 Dec;148(4):2021-49. Epub 2008 Oct 1.PMID: 18829985 [PubMed - indexed for MEDLINE]Related articlesFree article

Genetic and transgenic perturbations of carbon reserve production in Arabidopsis seeds reveal metabolic interactions of biochemical pathways.

Lin Y, Ulanov AV, Lozovaya V, Widholm J, Zhang G, Guo J, Goodman HM.

Planta. 2006 Dec;225(1):153-64. Epub 2006 Jul 29.PMID: 16896794 [PubMed - indexed for MEDLINE]Related articles

Identification of the novel protein QQS as a component of the starch metabolic network in Arabidopsis leaves.

Li L, Foster CM, Gan Q, Nettleton D, James MG, Myers AM, Wurtele ES.

Plant J. 2009 May;58(3):485-98. Epub 2008 Jan 18.PMID: 19154206 [PubMed - indexed for MEDLINE]Related articles

LEAFY COTYLEDON1 is a key regulator of fatty acid biosynthesis in Arabidopsis.

Mu J, Tan H, Zheng Q, Fu F, Liang Y, Zhang J, Yang X, Wang T, Chong K, Wang XJ, Zuo J.

Plant Physiol. 2008 Oct;148(2):1042-54. Epub 2008 Aug 8.PMID: 18689444 [PubMed - indexed for MEDLINE]Related articlesFree article

WRINKLED1 specifies the regulatory action of LEAFY COTYLEDON2 towards fatty acid metabolism during seed maturation in Arabidopsis.

Baud S, Mendoza MS, To A, Harscoët E, Lepiniec L, Dubreucq B.

Plant J. 2007 Jun;50(5):825-38. Epub 2007 Apr 5.PMID: 17419836 [PubMed - indexed for MEDLINE]Related articles

Approaches for extracting practical information from gene co-expression networks in plant biology.

Aoki K, Ogata Y, Shibata D.

Plant Cell Physiol. 2007 Mar;48(3):381-90. Epub 2007 Jan 23. Review.PMID: 17251202 [PubMed - indexed for MEDLINE]Related articles

An integrated genetic, genomic and systems approach defines gene networks regulated by the interaction of light and carbon signaling pathways in Arabidopsis.

Thum KE, Shin MJ, Gutiérrez RA, Mukherjee I, Katari MS, Nero D, Shasha D, Coruzzi GM.

BMC Syst Biol. 2008 Apr 4;2:31.PMID: 18387196 [PubMed - indexed for MEDLINE]Related articlesFree article

Genome wide co-expression among the starch debranching enzyme genes AtISA1, AtISA2, and AtISA3 in Arabidopsis thaliana.

Li L, Ilarslan H, James MG, Myers AM, Wurtele ES.

J Exp Bot. 2007;58(12):3323-42. Epub 2007 Sep 20.PMID: 17890231 [PubMed - indexed for MEDLINE]Related articlesFree article

Transcriptional coordination of the metabolic network in Arabidopsis.

Wei H, Persson S, Mehta T, Srinivasasainagendra V, Chen L, Page GP, Somerville C, Loraine A.

Plant Physiol. 2006 Oct;142(2):762-74. Epub 2006 Aug 18.PMID: 16920875 [PubMed - indexed for MEDLINE]Related articlesFree article

MAPMAN: a user-driven tool to display genomics data sets onto diagrams of metabolic pathways and other biological processes.

Thimm O, Bläsing O, Gibon Y, Nagel A, Meyer S, Krüger P, Selbig J, Müller LA, Rhee SY, Stitt M.

Plant J. 2004 Mar;37(6):914-39.PMID: 14996223 [PubMed - indexed for MEDLINE]Related articles

Arabidopsis At5g39790 encodes a chloroplast-localized, carbohydrate-binding, coiled-coil domain-containing putative scaffold protein.

Lohmeier-Vogel EM, Kerk D, Nimick M, Wrobel S, Vickerman L, Muench DG, Moorhead GB.

BMC Plant Biol. 2008 Nov 27;8:120.PMID: 19038037 [PubMed - indexed for MEDLINE]Related articlesFree article

Transcriptional co-regulation of secondary metabolism enzymes in Arabidopsis: functional and evolutionary implications.

Gachon CM, Langlois-Meurinne M, Henry Y, Saindrenan P.

Plant Mol Biol. 2005 May;58(2):229-45.PMID: 16027976 [PubMed - indexed for MEDLINE]Related articles

Phylogenetic profiling of the Arabidopsis thaliana proteome: what proteins distinguish plants from other organisms?

Gutiérrez RA, Green PJ, Keegstra K, Ohlrogge JB.

Genome Biol. 2004;5(8):R53. Epub 2004 Jul 15.PMID: 15287975 [PubMed - indexed for MEDLINE]Related articlesFree article

Temporal responses of transcripts, enzyme activities and metabolites after adding sucrose to carbon-deprived Arabidopsis seedlings.

Osuna D, Usadel B, Morcuende R, Gibon Y, Bläsing OE, Höhne M, Günter M, Kamlage B, Trethewey R, Scheible WR, Stitt M.

Plant J. 2007 Feb;49(3):463-91. Epub 2007 Jan 1.PMID: 17217462 [PubMed - indexed for MEDLINE]Related articles

Cloning, expression and characterization of a Nudix hydrolase that catalyzes the hydrolytic breakdown of ADP-glucose linked to starch biosynthesis in Arabidopsis thaliana.

Muñoz FJ, Baroja-Fernández E, Morán-Zorzano MT, Alonso-Casajús N, Pozueta-Romero J.

Plant Cell Physiol. 2006 Jul;47(7):926-34. Epub 2006 Jun 13.PMID: 16774931 [PubMed - indexed for MEDLINE]Related articles

The peroxisome deficient Arabidopsis mutant sse1 exhibits impaired fatty acid synthesis.

Lin Y, Cluette-Brown JE, Goodman HM.

Plant Physiol. 2004 Jun;135(2):814-27. Epub 2004 Jun 1.PMID: 15173561 [PubMed - indexed for MEDLINE]Related articlesFree article

Discrete and essential roles of the multiple domains of Arabidopsis FHY3 in mediating phytochrome A signal transduction.

Lin R, Teng Y, Park HJ, Ding L, Black C, Fang P, Wang H.

Plant Physiol. 2008 Oct;148(2):981-92. Epub 2008 Aug 20.PMID: 18715961 [PubMed - indexed for MEDLINE]Related articlesFree article

A new set of Arabidopsis expressed sequence tags from developing seeds. The metabolic pathway from carbohydrates to seed oil.

White JA, Todd J, Newman T, Focks N, Girke T, de Ilárduya OM, Jaworski JG, Ohlrogge JB, Benning C.

Plant Physiol. 2000 Dec;124(4):1582-94.PMID: 11115876 [PubMed - indexed for MEDLINE]Related articlesFree article

A chloroplast-localized dual-specificity protein phosphatase in Arabidopsis contains a phylogenetically dispersed and ancient carbohydrate-binding domain, which binds the polysaccharide starch.

Kerk D, Conley TR, Rodriguez FA, Tran HT, Nimick M, Muench DG, Moorhead GB.

Plant J. 2006 May;46(3):400-13.PMID: 16623901 [PubMed - indexed for MEDLINE]Related articles