Display Settings:

Format
Items per page
Sort by

Send to:

Choose Destination

    Results: 1 to 20 of 105

    1.

    At-TAX: a whole genome tiling array resource for developmental expression analysis and transcript identification in Arabidopsis thaliana.

    Laubinger S, Zeller G, Henz SR, Sachsenberg T, Widmer CK, Naouar N, Vuylsteke M, Schölkopf B, Rätsch G, Weigel D.

    Genome Biol. 2008;9(7):R112. Epub 2008 Jul 9.

    PMID:
    18613972
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    2.

    Stress-induced changes in the Arabidopsis thaliana transcriptome analyzed using whole-genome tiling arrays.

    Zeller G, Henz SR, Widmer CK, Sachsenberg T, Rätsch G, Weigel D, Laubinger S.

    Plant J. 2009 Jun;58(6):1068-82. Epub 2009 Feb 13. Erratum in: Plant J. 2009 Dec;60(5):929.

    PMID:
    19222804
    [PubMed - indexed for MEDLINE]
    3.

    Quantitative RNA expression analysis with Affymetrix Tiling 1.0R arrays identifies new E2F target genes.

    Naouar N, Vandepoele K, Lammens T, Casneuf T, Zeller G, van Hummelen P, Weigel D, Rätsch G, Inzé D, Kuiper M, De Veylder L, Vuylsteke M.

    Plant J. 2009 Jan;57(1):184-94. Epub 2008 Sep 19.

    PMID:
    18764924
    [PubMed - indexed for MEDLINE]
    4.

    Identification of transcribed sequences in Arabidopsis thaliana by using high-resolution genome tiling arrays.

    Stolc V, Samanta MP, Tongprasit W, Sethi H, Liang S, Nelson DC, Hegeman A, Nelson C, Rancour D, Bednarek S, Ulrich EL, Zhao Q, Wrobel RL, Newman CS, Fox BG, Phillips GN Jr, Markley JL, Sussman MR.

    Proc Natl Acad Sci U S A. 2005 Mar 22;102(12):4453-8. Epub 2005 Mar 8.

    PMID:
    15755812
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    5.

    Whole genome transcriptome polymorphisms in Arabidopsis thaliana.

    Zhang X, Byrnes JK, Gal TS, Li WH, Borevitz JO.

    Genome Biol. 2008;9(11):R165. Epub 2008 Nov 24.

    PMID:
    19025653
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    6.

    Assembly of a gene sequence tag microarray by reversible biotin-streptavidin capture for transcript analysis of Arabidopsis thaliana.

    Wirta V, Holmberg A, Lukacs M, Nilsson P, Hilson P, Uhlén M, Bhalerao RP, Lundeberg J.

    BMC Biotechnol. 2005 Feb 3;5:5.

    PMID:
    15689241
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    7.

    Genome-wide identification and testing of superior reference genes for transcript normalization in Arabidopsis.

    Czechowski T, Stitt M, Altmann T, Udvardi MK, Scheible WR.

    Plant Physiol. 2005 Sep;139(1):5-17.

    PMID:
    16166256
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    8.

    Tiling array-driven elucidation of transcriptional structures based on maximum-likelihood and Markov models.

    Toyoda T, Shinozaki K.

    Plant J. 2005 Aug;43(4):611-21.

    PMID:
    16098113
    [PubMed - indexed for MEDLINE]
    9.

    Support vector machines-based identification of alternative splicing in Arabidopsis thaliana from whole-genome tiling arrays.

    Eichner J, Zeller G, Laubinger S, Rätsch G.

    BMC Bioinformatics. 2011 Feb 16;12:55.

    PMID:
    21324185
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    10.

    GST-PRIME: an algorithm for genome-wide primer design.

    Leister D, Varotto C.

    Methods Mol Biol. 2007;402:141-58. Review.

    PMID:
    17951794
    [PubMed - indexed for MEDLINE]
    11.

    Global analysis of genetic, epigenetic and transcriptional polymorphisms in Arabidopsis thaliana using whole genome tiling arrays.

    Zhang X, Shiu SH, Cal A, Borevitz JO.

    PLoS Genet. 2008 Mar 21;4(3):e1000032. Erratum in: PLoS Genet. 2008 Jun;4(6). doi: 10.1371/annotation/e21d3565-fec6-44d9-8fab-83da49c7c0b8. Shiu, Shinhan [corrected to Shiu, Shin-Han].

    PMID:
    18369451
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    12.

    Genome-wide high-resolution mapping and functional analysis of DNA methylation in arabidopsis.

    Zhang X, Yazaki J, Sundaresan A, Cokus S, Chan SW, Chen H, Henderson IR, Shinn P, Pellegrini M, Jacobsen SE, Ecker JR.

    Cell. 2006 Sep 22;126(6):1189-201. Epub 2006 Aug 31.

    PMID:
    16949657
    [PubMed - indexed for MEDLINE]
    13.

    AGRONOMICS1: a new resource for Arabidopsis transcriptome profiling.

    Rehrauer H, Aquino C, Gruissem W, Henz SR, Hilson P, Laubinger S, Naouar N, Patrignani A, Rombauts S, Shu H, Van de Peer Y, Vuylsteke M, Weigel D, Zeller G, Hennig L.

    Plant Physiol. 2010 Feb;152(2):487-99. Epub 2009 Dec 23.

    PMID:
    20032078
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    14.

    Sense and antisense transcripts of convergent gene pairs in Arabidopsis thaliana can share a common polyadenylation region.

    Zubko E, Kunova A, Meyer P.

    PLoS One. 2011 Feb 2;6(2):e16769.

    PMID:
    21311762
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    15.

    Orphan transcripts in Arabidopsis thaliana: identification of several hundred previously unrecognized genes.

    Riaño-Pachón DM, Dreyer I, Mueller-Roeber B.

    Plant J. 2005 Jul;43(2):205-12.

    PMID:
    15998307
    [PubMed - indexed for MEDLINE]
    16.

    Alternative polyadenylation blooms.

    Rosonina E, Manley JL.

    Dev Cell. 2010 Feb 16;18(2):172-4.

    PMID:
    20159589
    [PubMed - indexed for MEDLINE]
    17.

    Conservation and divergence of light-regulated genome expression patterns during seedling development in rice and Arabidopsis.

    Jiao Y, Ma L, Strickland E, Deng XW.

    Plant Cell. 2005 Dec;17(12):3239-56. Epub 2005 Nov 11.

    PMID:
    16284311
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    18.

    Transcript normalization and segmentation of tiling array data.

    Zeller G, Henz SR, Laubinger S, Weigel D, Rätsch G.

    Pac Symp Biocomput. 2008:527-38.

    PMID:
    18229713
    [PubMed - indexed for MEDLINE]
    Free Article
    19.

    Genome-wide insertional mutagenesis of Arabidopsis thaliana.

    Alonso JM, Stepanova AN, Leisse TJ, Kim CJ, Chen H, Shinn P, Stevenson DK, Zimmerman J, Barajas P, Cheuk R, Gadrinab C, Heller C, Jeske A, Koesema E, Meyers CC, Parker H, Prednis L, Ansari Y, Choy N, Deen H, Geralt M, Hazari N, Hom E, Karnes M, Mulholland C, Ndubaku R, Schmidt I, Guzman P, Aguilar-Henonin L, Schmid M, Weigel D, Carter DE, Marchand T, Risseeuw E, Brogden D, Zeko A, Crosby WL, Berry CC, Ecker JR.

    Science. 2003 Aug 1;301(5633):653-7. Erratum in: Science. 2003 Sep;301(5641):1849.

    PMID:
    12893945
    [PubMed - indexed for MEDLINE]
    20.

    Analysis of the transcriptional complexity of Arabidopsis thaliana by massively parallel signature sequencing.

    Meyers BC, Vu TH, Tej SS, Ghazal H, Matvienko M, Agrawal V, Ning J, Haudenschild CD.

    Nat Biotechnol. 2004 Aug;22(8):1006-11. Epub 2004 Jul 11.

    PMID:
    15247925
    [PubMed - indexed for MEDLINE]

      Display Settings:

      Format
      Items per page
      Sort by

      Send to:

      Choose Destination

      Supplemental Content

      Find related data

      Write to the Help Desk