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    Results: 1 to 20 of 104

    1.

    An en masse phenotype and function prediction system for Mus musculus.

    Taşan M, Tian W, Hill DP, Gibbons FD, Blake JA, Roth FP.

    Genome Biol. 2008;9 Suppl 1:S8. Epub 2008 Jun 27.

    PMID:
    18613952
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    2.

    Combining guilt-by-association and guilt-by-profiling to predict Saccharomyces cerevisiae gene function.

    Tian W, Zhang LV, Taşan M, Gibbons FD, King OD, Park J, Wunderlich Z, Cherry JM, Roth FP.

    Genome Biol. 2008;9 Suppl 1:S7. Epub 2008 Jun 27.

    PMID:
    18613951
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    3.

    A critical assessment of Mus musculus gene function prediction using integrated genomic evidence.

    Peña-Castillo L, Tasan M, Myers CL, Lee H, Joshi T, Zhang C, Guan Y, Leone M, Pagnani A, Kim WK, Krumpelman C, Tian W, Obozinski G, Qi Y, Mostafavi S, Lin GN, Berriz GF, Gibbons FD, Lanckriet G, Qiu J, Grant C, Barutcuoglu Z, Hill DP, Warde-Farley D, Grouios C, Ray D, Blake JA, Deng M, Jordan MI, Noble WS, Morris Q, Klein-Seetharaman J, Bar-Joseph Z, Chen T, Sun F, Troyanskaya OG, Marcotte EM, Xu D, Hughes TR, Roth FP.

    Genome Biol. 2008;9 Suppl 1:S2. Epub 2008 Jun 27.

    PMID:
    18613946
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    4.

    PlasmoDraft: a database of Plasmodium falciparum gene function predictions based on postgenomic data.

    Bréhélin L, Dufayard JF, Gascuel O.

    BMC Bioinformatics. 2008 Oct 16;9:440.

    PMID:
    18925948
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    5.

    Genome wide prediction of protein function via a generic knowledge discovery approach based on evidence integration.

    Xiong J, Rayner S, Luo K, Li Y, Chen S.

    BMC Bioinformatics. 2006 May 25;7:268.

    PMID:
    16725034
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    6.

    Integration of relational and hierarchical network information for protein function prediction.

    Jiang X, Nariai N, Steffen M, Kasif S, Kolaczyk ED.

    BMC Bioinformatics. 2008 Aug 22;9:350.

    PMID:
    18721473
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    7.

    Probabilistic protein function prediction from heterogeneous genome-wide data.

    Nariai N, Kolaczyk ED, Kasif S.

    PLoS One. 2007 Mar 28;2(3):e337.

    PMID:
    17396164
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    8.

    The development of PIPA: an integrated and automated pipeline for genome-wide protein function annotation.

    Yu C, Zavaljevski N, Desai V, Johnson S, Stevens FJ, Reifman J.

    BMC Bioinformatics. 2008 Jan 25;9:52.

    PMID:
    18221520
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    9.

    Consistent probabilistic outputs for protein function prediction.

    Obozinski G, Lanckriet G, Grant C, Jordan MI, Noble WS.

    Genome Biol. 2008;9 Suppl 1:S6. Epub 2008 Jun 27.

    PMID:
    18613950
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    10.

    Prediction of evolutionarily conserved interologs in Mus musculus.

    Yellaboina S, Dudekula DB, Ko MSh.

    BMC Genomics. 2008 Oct 8;9:465.

    PMID:
    18842131
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    11.

    Incorporating functional inter-relationships into protein function prediction algorithms.

    Pandey G, Myers CL, Kumar V.

    BMC Bioinformatics. 2009 May 12;10:142.

    PMID:
    19435516
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    12.

    PFP: Automated prediction of gene ontology functional annotations with confidence scores using protein sequence data.

    Hawkins T, Chitale M, Luban S, Kihara D.

    Proteins. 2009 Feb 15;74(3):566-82.

    PMID:
    18655063
    [PubMed - indexed for MEDLINE]
    13.

    GeneMANIA: a real-time multiple association network integration algorithm for predicting gene function.

    Mostafavi S, Ray D, Warde-Farley D, Grouios C, Morris Q.

    Genome Biol. 2008;9 Suppl 1:S4. Epub 2008 Jun 27.

    PMID:
    18613948
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    14.

    Inferring mouse gene functions from genomic-scale data using a combined functional network/classification strategy.

    Kim WK, Krumpelman C, Marcotte EM.

    Genome Biol. 2008;9 Suppl 1:S5. Epub 2008 Jun 27.

    PMID:
    18613949
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    15.
    16.

    Predicting gene function in a hierarchical context with an ensemble of classifiers.

    Guan Y, Myers CL, Hess DC, Barutcuoglu Z, Caudy AA, Troyanskaya OG.

    Genome Biol. 2008;9 Suppl 1:S3. Epub 2008 Jun 27.

    PMID:
    18613947
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    17.

    Information theory applied to the sparse gene ontology annotation network to predict novel gene function.

    Tao Y, Sam L, Li J, Friedman C, Lussier YA.

    Bioinformatics. 2007 Jul 1;23(13):i529-38.

    PMID:
    17646340
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    18.

    Biological Network Inference and analysis using SEBINI and CABIN.

    Taylor R, Singhal M.

    Methods Mol Biol. 2009;541:551-76. Review.

    PMID:
    19381531
    [PubMed - indexed for MEDLINE]
    19.

    The impact of multifunctional genes on "guilt by association" analysis.

    Gillis J, Pavlidis P.

    PLoS One. 2011 Feb 18;6(2):e17258.

    PMID:
    21364756
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    20.

    Mining phenotypes for gene function prediction.

    Groth P, Weiss B, Pohlenz HD, Leser U.

    BMC Bioinformatics. 2008 Mar 3;9:136.

    PMID:
    18315868
    [PubMed - indexed for MEDLINE]
    Free PMC Article

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