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    Results: 1 to 20 of 145

    1.

    Consistent probabilistic outputs for protein function prediction.

    Obozinski G, Lanckriet G, Grant C, Jordan MI, Noble WS.

    Genome Biol. 2008;9 Suppl 1:S6. Epub 2008 Jun 27.

    PMID:
    18613950
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    2.

    Hierarchical multi-label prediction of gene function.

    Barutcuoglu Z, Schapire RE, Troyanskaya OG.

    Bioinformatics. 2006 Apr 1;22(7):830-6. Epub 2006 Jan 12.

    PMID:
    16410319
    [PubMed - indexed for MEDLINE]
    Free Article
    3.

    The development of PIPA: an integrated and automated pipeline for genome-wide protein function annotation.

    Yu C, Zavaljevski N, Desai V, Johnson S, Stevens FJ, Reifman J.

    BMC Bioinformatics. 2008 Jan 25;9:52.

    PMID:
    18221520
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    4.

    Integration of relational and hierarchical network information for protein function prediction.

    Jiang X, Nariai N, Steffen M, Kasif S, Kolaczyk ED.

    BMC Bioinformatics. 2008 Aug 22;9:350.

    PMID:
    18721473
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    5.

    Bayesian Markov Random Field analysis for protein function prediction based on network data.

    Kourmpetis YA, van Dijk AD, Bink MC, van Ham RC, ter Braak CJ.

    PLoS One. 2010 Feb 24;5(2):e9293.

    PMID:
    20195360
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    6.

    A critical assessment of Mus musculus gene function prediction using integrated genomic evidence.

    Peña-Castillo L, Tasan M, Myers CL, Lee H, Joshi T, Zhang C, Guan Y, Leone M, Pagnani A, Kim WK, Krumpelman C, Tian W, Obozinski G, Qi Y, Mostafavi S, Lin GN, Berriz GF, Gibbons FD, Lanckriet G, Qiu J, Grant C, Barutcuoglu Z, Hill DP, Warde-Farley D, Grouios C, Ray D, Blake JA, Deng M, Jordan MI, Noble WS, Morris Q, Klein-Seetharaman J, Bar-Joseph Z, Chen T, Sun F, Troyanskaya OG, Marcotte EM, Xu D, Hughes TR, Roth FP.

    Genome Biol. 2008;9 Suppl 1:S2. Epub 2008 Jun 27.

    PMID:
    18613946
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    7.

    PFP: Automated prediction of gene ontology functional annotations with confidence scores using protein sequence data.

    Hawkins T, Chitale M, Luban S, Kihara D.

    Proteins. 2009 Feb 15;74(3):566-82.

    PMID:
    18655063
    [PubMed - indexed for MEDLINE]
    8.

    Globally predicting protein functions based on co-expressed protein-protein interaction networks and ontology taxonomy similarities.

    Zhu M, Gao L, Guo Z, Li Y, Wang D, Wang J, Wang C.

    Gene. 2007 Apr 15;391(1-2):113-9. Epub 2006 Dec 22.

    PMID:
    17289301
    [PubMed - indexed for MEDLINE]
    9.

    Automated methods of predicting the function of biological sequences using GO and BLAST.

    Jones CE, Baumann U, Brown AL.

    BMC Bioinformatics. 2005 Nov 15;6:272.

    PMID:
    16288652
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    10.

    PlasmoDraft: a database of Plasmodium falciparum gene function predictions based on postgenomic data.

    Bréhélin L, Dufayard JF, Gascuel O.

    BMC Bioinformatics. 2008 Oct 16;9:440.

    PMID:
    18925948
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    11.

    A categorization approach to automated ontological function annotation.

    Verspoor K, Cohn J, Mniszewski S, Joslyn C.

    Protein Sci. 2006 Jun;15(6):1544-9. Epub 2006 May 2.

    PMID:
    16672243
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    12.

    Mining protein function from text using term-based support vector machines.

    Rice SB, Nenadic G, Stapley BJ.

    BMC Bioinformatics. 2005;6 Suppl 1:S22. Epub 2005 May 24.

    PMID:
    15960835
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    13.

    A relation based measure of semantic similarity for Gene Ontology annotations.

    Sheehan B, Quigley A, Gaudin B, Dobson S.

    BMC Bioinformatics. 2008 Nov 4;9:468.

    PMID:
    18983678
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    14.

    Incorporating functional inter-relationships into protein function prediction algorithms.

    Pandey G, Myers CL, Kumar V.

    BMC Bioinformatics. 2009 May 12;10:142.

    PMID:
    19435516
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    15.

    Predicting gene function in a hierarchical context with an ensemble of classifiers.

    Guan Y, Myers CL, Hess DC, Barutcuoglu Z, Caudy AA, Troyanskaya OG.

    Genome Biol. 2008;9 Suppl 1:S3. Epub 2008 Jun 27.

    PMID:
    18613947
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    16.

    Automatic annotation of protein motif function with Gene Ontology terms.

    Lu X, Zhai C, Gopalakrishnan V, Buchanan BG.

    BMC Bioinformatics. 2004 Sep 2;5:122.

    PMID:
    15345032
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    17.

    An en masse phenotype and function prediction system for Mus musculus.

    Taşan M, Tian W, Hill DP, Gibbons FD, Blake JA, Roth FP.

    Genome Biol. 2008;9 Suppl 1:S8. Epub 2008 Jun 27.

    PMID:
    18613952
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    18.

    Prediction of protein subcellular localization by weighted gene ontology terms.

    Chi SM.

    Biochem Biophys Res Commun. 2010 Aug 27;399(3):402-5. Epub 2010 Aug 3.

    PMID:
    20678488
    [PubMed - indexed for MEDLINE]
    19.

    Enhanced automated function prediction using distantly related sequences and contextual association by PFP.

    Hawkins T, Luban S, Kihara D.

    Protein Sci. 2006 Jun;15(6):1550-6. Epub 2006 May 2.

    PMID:
    16672240
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    20.

    Hierarchical classification of gene ontology terms using the GOstruct method.

    Sokolov A, Ben-Hur A.

    J Bioinform Comput Biol. 2010 Apr;8(2):357-76.

    PMID:
    20401950
    [PubMed - indexed for MEDLINE]

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