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    Results: 1 to 20 of 115

    1.

    GeneMANIA: a real-time multiple association network integration algorithm for predicting gene function.

    Mostafavi S, Ray D, Warde-Farley D, Grouios C, Morris Q.

    Genome Biol. 2008;9 Suppl 1:S4. Epub 2008 Jun 27.

    PMID:
    18613948
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    2.

    The GeneMANIA prediction server: biological network integration for gene prioritization and predicting gene function.

    Warde-Farley D, Donaldson SL, Comes O, Zuberi K, Badrawi R, Chao P, Franz M, Grouios C, Kazi F, Lopes CT, Maitland A, Mostafavi S, Montojo J, Shao Q, Wright G, Bader GD, Morris Q.

    Nucleic Acids Res. 2010 Jul;38(Web Server issue):W214-20.

    PMID:
    20576703
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    3.

    Fast integration of heterogeneous data sources for predicting gene function with limited annotation.

    Mostafavi S, Morris Q.

    Bioinformatics. 2010 Jul 15;26(14):1759-65. Epub 2010 May 27.

    PMID:
    20507895
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    4.

    Inferring mouse gene functions from genomic-scale data using a combined functional network/classification strategy.

    Kim WK, Krumpelman C, Marcotte EM.

    Genome Biol. 2008;9 Suppl 1:S5. Epub 2008 Jun 27.

    PMID:
    18613949
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    5.

    Fast and accurate alignment of multiple protein networks.

    Kalaev M, Bafna V, Sharan R.

    J Comput Biol. 2009 Aug;16(8):989-99.

    PMID:
    19624266
    [PubMed - indexed for MEDLINE]
    6.

    Predicting gene function in a hierarchical context with an ensemble of classifiers.

    Guan Y, Myers CL, Hess DC, Barutcuoglu Z, Caudy AA, Troyanskaya OG.

    Genome Biol. 2008;9 Suppl 1:S3. Epub 2008 Jun 27.

    PMID:
    18613947
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    7.

    Incorporating functional inter-relationships into protein function prediction algorithms.

    Pandey G, Myers CL, Kumar V.

    BMC Bioinformatics. 2009 May 12;10:142.

    PMID:
    19435516
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    8.

    Fast protein classification with multiple networks.

    Tsuda K, Shin H, Schölkopf B.

    Bioinformatics. 2005 Sep 1;21 Suppl 2:ii59-65.

    PMID:
    16204126
    [PubMed - indexed for MEDLINE]
    Free Article
    9.

    A critical assessment of Mus musculus gene function prediction using integrated genomic evidence.

    Peña-Castillo L, Tasan M, Myers CL, Lee H, Joshi T, Zhang C, Guan Y, Leone M, Pagnani A, Kim WK, Krumpelman C, Tian W, Obozinski G, Qi Y, Mostafavi S, Lin GN, Berriz GF, Gibbons FD, Lanckriet G, Qiu J, Grant C, Barutcuoglu Z, Hill DP, Warde-Farley D, Grouios C, Ray D, Blake JA, Deng M, Jordan MI, Noble WS, Morris Q, Klein-Seetharaman J, Bar-Joseph Z, Chen T, Sun F, Troyanskaya OG, Marcotte EM, Xu D, Hughes TR, Roth FP.

    Genome Biol. 2008;9 Suppl 1:S2. Epub 2008 Jun 27.

    PMID:
    18613946
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    10.

    GeneMANIA Cytoscape plugin: fast gene function predictions on the desktop.

    Montojo J, Zuberi K, Rodriguez H, Kazi F, Wright G, Donaldson SL, Morris Q, Bader GD.

    Bioinformatics. 2010 Nov 15;26(22):2927-8. Epub 2010 Oct 5.

    PMID:
    20926419
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    11.

    Protein function prediction with the shortest path in functional linkage graph and boosting.

    Zhao XM, Chen L, Aihara K.

    Int J Bioinform Res Appl. 2008;4(4):375-84.

    PMID:
    19008182
    [PubMed - indexed for MEDLINE]
    12.

    The impact of multifunctional genes on "guilt by association" analysis.

    Gillis J, Pavlidis P.

    PLoS One. 2011 Feb 18;6(2):e17258.

    PMID:
    21364756
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    13.

    Gene function prediction from synthetic lethality networks via ranking on demand.

    Lippert C, Ghahramani Z, Borgwardt KM.

    Bioinformatics. 2010 Apr 1;26(7):912-8. Epub 2010 Feb 12.

    PMID:
    20154010
    [PubMed - indexed for MEDLINE]
    Free Article
    14.

    Combining guilt-by-association and guilt-by-profiling to predict Saccharomyces cerevisiae gene function.

    Tian W, Zhang LV, Taşan M, Gibbons FD, King OD, Park J, Wunderlich Z, Cherry JM, Roth FP.

    Genome Biol. 2008;9 Suppl 1:S7. Epub 2008 Jun 27.

    PMID:
    18613951
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    15.

    Integrating functional genomics data.

    Lee I, Marcotte EM.

    Methods Mol Biol. 2008;453:267-78.

    PMID:
    18712309
    [PubMed - indexed for MEDLINE]
    16.

    Prosecutor: parameter-free inference of gene function for prokaryotes using DNA microarray data, genomic context and multiple gene annotation sources.

    Blom EJ, Breitling R, Hofstede KJ, Roerdink JB, van Hijum SA, Kuipers OP.

    BMC Genomics. 2008 Oct 21;9:495.

    PMID:
    18939968
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    17.

    An en masse phenotype and function prediction system for Mus musculus.

    Taşan M, Tian W, Hill DP, Gibbons FD, Blake JA, Roth FP.

    Genome Biol. 2008;9 Suppl 1:S8. Epub 2008 Jun 27.

    PMID:
    18613952
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    18.

    A structural approach for finding functional modules from large biological networks.

    Mete M, Tang F, Xu X, Yuruk N.

    BMC Bioinformatics. 2008 Aug 12;9 Suppl 9:S19.

    PMID:
    18793464
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    19.

    Biological Network Inference and analysis using SEBINI and CABIN.

    Taylor R, Singhal M.

    Methods Mol Biol. 2009;541:551-76. Review.

    PMID:
    19381531
    [PubMed - indexed for MEDLINE]
    20.

    An integrated probabilistic approach for gene function prediction using multiple sources of high-throughput data.

    Zhang C, Joshi T, Lin GN, Xu D.

    Int J Comput Biol Drug Des. 2008;1(3):254-74.

    PMID:
    20054992
    [PubMed - indexed for MEDLINE]

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