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    Results: 1 to 20 of 65

    1.

    A race through the maze of genomic evidence.

    Hughes TR, Roth FP.

    Genome Biol. 2008;9 Suppl 1:S1. Epub 2008 Jun 27. No abstract available.

    PMID:
    18613945
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    2.

    Predicting gene function in a hierarchical context with an ensemble of classifiers.

    Guan Y, Myers CL, Hess DC, Barutcuoglu Z, Caudy AA, Troyanskaya OG.

    Genome Biol. 2008;9 Suppl 1:S3. Epub 2008 Jun 27.

    PMID:
    18613947
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    3.

    A critical assessment of Mus musculus gene function prediction using integrated genomic evidence.

    Peña-Castillo L, Tasan M, Myers CL, Lee H, Joshi T, Zhang C, Guan Y, Leone M, Pagnani A, Kim WK, Krumpelman C, Tian W, Obozinski G, Qi Y, Mostafavi S, Lin GN, Berriz GF, Gibbons FD, Lanckriet G, Qiu J, Grant C, Barutcuoglu Z, Hill DP, Warde-Farley D, Grouios C, Ray D, Blake JA, Deng M, Jordan MI, Noble WS, Morris Q, Klein-Seetharaman J, Bar-Joseph Z, Chen T, Sun F, Troyanskaya OG, Marcotte EM, Xu D, Hughes TR, Roth FP.

    Genome Biol. 2008;9 Suppl 1:S2. Epub 2008 Jun 27.

    PMID:
    18613946
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    4.

    GeneMANIA: a real-time multiple association network integration algorithm for predicting gene function.

    Mostafavi S, Ray D, Warde-Farley D, Grouios C, Morris Q.

    Genome Biol. 2008;9 Suppl 1:S4. Epub 2008 Jun 27.

    PMID:
    18613948
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    5.

    Evolutionary origins of human apoptosis and genome-stability gene networks.

    Castro MA, Dalmolin RJ, Moreira JC, Mombach JC, de Almeida RM.

    Nucleic Acids Res. 2008 Nov;36(19):6269-83. Epub 2008 Oct 2.

    PMID:
    18832373
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    6.

    Genomic instability is associated with natural life span variation in Saccharomyces cerevisiae.

    Qin H, Lu M, Goldfarb DS.

    PLoS One. 2008 Jul 16;3(7):e2670.

    PMID:
    18628831
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    7.

    An en masse phenotype and function prediction system for Mus musculus.

    Taşan M, Tian W, Hill DP, Gibbons FD, Blake JA, Roth FP.

    Genome Biol. 2008;9 Suppl 1:S8. Epub 2008 Jun 27.

    PMID:
    18613952
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    8.

    Genome-wide high-resolution chromatin immunoprecipitation of meiotic chromosomal proteins in Saccharomyces cerevisiae.

    Kugou K, Ohta K.

    Methods Mol Biol. 2009;557:285-304. Review.

    PMID:
    19799189
    [PubMed - indexed for MEDLINE]
    9.

    Eukaryote-to-eukaryote gene transfer events revealed by the genome sequence of the wine yeast Saccharomyces cerevisiae EC1118.

    Novo M, Bigey F, Beyne E, Galeote V, Gavory F, Mallet S, Cambon B, Legras JL, Wincker P, Casaregola S, Dequin S.

    Proc Natl Acad Sci U S A. 2009 Sep 22;106(38):16333-8. Epub 2009 Sep 9.

    PMID:
    19805302
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    10.

    A computational approach for genome-wide mapping of splicing factor binding sites.

    Akerman M, David-Eden H, Pinter RY, Mandel-Gutfreund Y.

    Genome Biol. 2009;10(3):R30. Epub 2009 Mar 18.

    PMID:
    19296853
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    11.

    Bacteriophage Mu integration in yeast and mammalian genomes.

    Paatero AO, Turakainen H, Happonen LJ, Olsson C, Palomäki T, Pajunen MI, Meng X, Otonkoski T, Tuuri T, Berry C, Malani N, Frilander MJ, Bushman FD, Savilahti H.

    Nucleic Acids Res. 2008 Dec;36(22):e148. Epub 2008 Oct 25.

    PMID:
    18953026
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    12.

    The quest for a message: budding yeast, a model organism to study the control of pre-mRNA splicing.

    Meyer M, Vilardell J.

    Brief Funct Genomic Proteomic. 2009 Jan;8(1):60-7. Epub 2009 Mar 11. Review.

    PMID:
    19279072
    [PubMed - indexed for MEDLINE]
    Free Article
    13.

    Comparative genome analysis of a Saccharomyces cerevisiae wine strain.

    Borneman AR, Forgan AH, Pretorius IS, Chambers PJ.

    FEMS Yeast Res. 2008 Nov;8(7):1185-95. Epub 2008 Sep 4.

    PMID:
    18778279
    [PubMed - indexed for MEDLINE]
    14.

    A multi-layer method to study genome-scale positions of nucleosomes.

    Di Gesù V, Lo Bosco G, Pinello L, Yuan GC, Corona DF.

    Genomics. 2009 Feb;93(2):140-5. Epub 2008 Nov 21.

    PMID:
    18951969
    [PubMed - indexed for MEDLINE]
    15.

    Combining experts in order to identify binding sites in yeast and mouse genomic data.

    Robinson M, González Castellano C, Rezwan F, Adams R, Davey N, Rust A, Sun Y.

    Neural Netw. 2008 Aug;21(6):856-61. Epub 2008 Aug 3.

    PMID:
    18710795
    [PubMed - indexed for MEDLINE]
    16.

    Computational reconstruction of protein-protein interaction networks: algorithms and issues.

    Franzosa E, Linghu B, Xia Y.

    Methods Mol Biol. 2009;541:89-100. Review.

    PMID:
    19381528
    [PubMed - indexed for MEDLINE]
    17.

    Advances in molecular methods to alter chromosomes and genome in the yeast Saccharomyces cerevisiae.

    Sugiyama M, Yamagishi K, Kim YH, Kaneko Y, Nishizawa M, Harashima S.

    Appl Microbiol Biotechnol. 2009 Oct;84(6):1045-52. Epub 2009 Aug 15. Review.

    PMID:
    19685240
    [PubMed - indexed for MEDLINE]
    18.

    Reducing spatial flaws in oligonucleotide arrays by using neighborhood information.

    Arteaga-Salas JM, Harrison AP, Upton GJ.

    Stat Appl Genet Mol Biol. 2008;7(1):Article29. Epub 2008 Oct 17.

    PMID:
    18976225
    [PubMed - indexed for MEDLINE]
    Free Article
    19.

    'Calling Cards' method for high-throughput identification of targets of yeast DNA-binding proteins.

    Wang H, Heinz ME, Crosby SD, Johnston M, Mitra RD.

    Nat Protoc. 2008;3(10):1569-77.

    PMID:
    18802438
    [PubMed - indexed for MEDLINE]
    20.

    Promoter-sharing by different genes in human genome--CPNE1 and RBM12 gene pair as an example.

    Yang W, Ng P, Zhao M, Wong TK, Yiu SM, Lau YL.

    BMC Genomics. 2008 Oct 3;9:456.

    PMID:
    18831769
    [PubMed - indexed for MEDLINE]
    Free PMC Article

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