PubMed

Identification of a cis-regulatory element by transient analysis of co-ordinately regulated genes.

Dare AP, Schaffer RJ, Lin-Wang K, Allan AC, Hellens RP.

Plant Methods. 2008 Jul 7;4:17.PMID: 18601751 [PubMed - in process]Related articlesFree article

Regulation of the anthocyanin biosynthetic pathway by the TTG1/bHLH/Myb transcriptional complex in Arabidopsis seedlings.

Gonzalez A, Zhao M, Leavitt JM, Lloyd AM.

Plant J. 2008 Mar;53(5):814-27. Epub 2007 Nov 23.PMID: 18036197 [PubMed - indexed for MEDLINE]Related articles

Putative cold acclimation pathways in Arabidopsis thaliana identified by a combined analysis of mRNA co-expression patterns, promoter motifs and transcription factors.

Chawade A, Bräutigam M, Lindlöf A, Olsson O, Olsson B.

BMC Genomics. 2007 Sep 2;8:304.PMID: 17764576 [PubMed - indexed for MEDLINE]Related articlesFree article

Environmental regulation of leaf colour in red 35S:PAP1 Arabidopsis thaliana.

Rowan DD, Cao M, Lin-Wang K, Cooney JM, Jensen DJ, Austin PT, Hunt MB, Norling C, Hellens RP, Schaffer RJ, Allan AC.

New Phytol. 2009;182(1):102-15. Epub 2009 Jan 12.PMID: 19192188 [PubMed - indexed for MEDLINE]Related articles

Identification of cis-elements that regulate gene expression during initiation of axillary bud outgrowth in Arabidopsis.

Tatematsu K, Ward S, Leyser O, Kamiya Y, Nambara E.

Plant Physiol. 2005 Jun;138(2):757-66. Epub 2005 May 20.PMID: 15908603 [PubMed - indexed for MEDLINE]Related articlesFree article

Functional genomics by integrated analysis of metabolome and transcriptome of Arabidopsis plants over-expressing an MYB transcription factor.

Tohge T, Nishiyama Y, Hirai MY, Yano M, Nakajima J, Awazuhara M, Inoue E, Takahashi H, Goodenowe DB, Kitayama M, Noji M, Yamazaki M, Saito K.

Plant J. 2005 Apr;42(2):218-35.PMID: 15807784 [PubMed - indexed for MEDLINE]Related articles

Identifying promoter features of co-regulated genes with similar network motifs.

Harari O, del Val C, Romero-Zaliz R, Shin D, Huang H, Groisman EA, Zwir I.

BMC Bioinformatics. 2009 Apr 29;10 Suppl 4:S1.PMID: 19426448 [PubMed - indexed for MEDLINE]Related articlesFree article

CompMoby: comparative MobyDick for detection of cis-regulatory motifs.

Chaivorapol C, Melton C, Wei G, Yeh RF, Ramalho-Santos M, Blelloch R, Li H.

BMC Bioinformatics. 2008 Oct 27;9:455.PMID: 18950538 [PubMed - indexed for MEDLINE]Related articlesFree article

A role for circadian evening elements in cold-regulated gene expression in Arabidopsis.

Mikkelsen MD, Thomashow MF.

Plant J. 2009 Oct;60(2):328-39. Epub 2009 Jun 30.PMID: 19566593 [PubMed - indexed for MEDLINE]Related articles

Seed storage protein gene promoters contain conserved DNA motifs in Brassicaceae, Fabaceae and Poaceae.

Fauteux F, Strömvik MV.

BMC Plant Biol. 2009 Oct 20;9:126.PMID: 19843335 [PubMed - indexed for MEDLINE]Related articlesFree article

PlantPAN: Plant promoter analysis navigator, for identifying combinatorial cis-regulatory elements with distance constraint in plant gene groups.

Chang WC, Lee TY, Huang HD, Huang HY, Pan RL.

BMC Genomics. 2008 Nov 26;9:561.PMID: 19036138 [PubMed - indexed for MEDLINE]Related articlesFree article

Expression analysis of anthocyanin regulatory genes in response to different light qualities in Arabidopsis thaliana.

Cominelli E, Gusmaroli G, Allegra D, Galbiati M, Wade HK, Jenkins GI, Tonelli C.

J Plant Physiol. 2008 May 26;165(8):886-94. Epub 2007 Sep 4.PMID: 17766004 [PubMed - indexed for MEDLINE]Related articles

Identification and characterization of R2R3-MYB and bHLH transcription factors regulating anthocyanin biosynthesis in gentian flowers.

Nakatsuka T, Haruta KS, Pitaksutheepong C, Abe Y, Kakizaki Y, Yamamoto K, Shimada N, Yamamura S, Nishihara M.

Plant Cell Physiol. 2008 Dec;49(12):1818-29. Epub 2008 Oct 30.PMID: 18974195 [PubMed - indexed for MEDLINE]Related articles

Cis-motifs upstream of the transcription and translation initiation sites are effectively revealed by their positional disequilibrium in eukaryote genomes using frequency distribution curves.

Berendzen KW, Stüber K, Harter K, Wanke D.

BMC Bioinformatics. 2006 Nov 30;7:522.PMID: 17137509 [PubMed - indexed for MEDLINE]Related articlesFree article

The LAP1 MYB transcription factor orchestrates anthocyanidin biosynthesis and glycosylation in Medicago.

Peel GJ, Pang Y, Modolo LV, Dixon RA.

Plant J. 2009 Jul;59(1):136-49. Epub 2009 Apr 2.PMID: 19368693 [PubMed - indexed for MEDLINE]Related articles

AGRIS and AtRegNet. a platform to link cis-regulatory elements and transcription factors into regulatory networks.

Palaniswamy SK, James S, Sun H, Lamb RS, Davuluri RV, Grotewold E.

Plant Physiol. 2006 Mar;140(3):818-29.PMID: 16524982 [PubMed - indexed for MEDLINE]Related articlesFree article

Development of tobacco callus cultures over expressing Arabidopsis PAP1/MYB75 transcription factor and characterization of anthocyanin biosynthesis.

Zhou LL, Zeng HN, Shi MZ, Xie DY.

Planta. 2008 Dec;229(1):37-51. Epub 2008 Sep 3.PMID: 18766373 [PubMed - indexed for MEDLINE]Related articles

Co-expression of adjacent genes in yeast cannot be simply attributed to shared regulatory system.

Tsai HK, Su CP, Lu MY, Shih CH, Wang D.

BMC Genomics. 2007 Oct 3;8:352.PMID: 17910772 [PubMed - indexed for MEDLINE]Related articlesFree article

High-resolution DNA-binding specificity analysis of yeast transcription factors.

Zhu C, Byers KJ, McCord RP, Shi Z, Berger MF, Newburger DE, Saulrieta K, Smith Z, Shah MV, Radhakrishnan M, Philippakis AA, Hu Y, De Masi F, Pacek M, Rolfs A, Murthy T, Labaer J, Bulyk ML.

Genome Res. 2009 Apr;19(4):556-66. Epub 2009 Jan 21.PMID: 19158363 [PubMed - indexed for MEDLINE]Related articlesFree article

Characterization of WRKY co-regulatory networks in rice and Arabidopsis.

Berri S, Abbruscato P, Faivre-Rampant O, Brasileiro AC, Fumasoni I, Satoh K, Kikuchi S, Mizzi L, Morandini P, Pè ME, Piffanelli P.

BMC Plant Biol. 2009 Sep 22;9:120.PMID: 19772648 [PubMed - indexed for MEDLINE]Related articlesFree article