PubMed

Asymmetric histone modifications between the original and derived loci of human segmental duplications.

Zheng D.

Genome Biol. 2008;9(7):R105. Epub 2008 Jul 3.PMID: 18598352 [PubMed - indexed for MEDLINE]Related articlesFree article

Divergent origins and concerted expansion of two segmental duplications on chromosome 16.

Eichler EE, Johnson ME, Alkan C, Tuzun E, Sahinalp C, Misceo D, Archidiacono N, Rocchi M.

J Hered. 2001 Nov-Dec;92(6):462-8.PMID: 11948212 [PubMed - indexed for MEDLINE]Related articlesFree article

Evolutionary mechanisms shaping the genomic structure of the Williams-Beuren syndrome chromosomal region at human 7q11.23.

Antonell A, de Luis O, Domingo-Roura X, Pérez-Jurado LA.

Genome Res. 2005 Sep;15(9):1179-88.PMID: 16140988 [PubMed - indexed for MEDLINE]Related articlesFree article

Ancestral reconstruction of segmental duplications reveals punctuated cores of human genome evolution.

Jiang Z, Tang H, Ventura M, Cardone MF, Marques-Bonet T, She X, Pevzner PA, Eichler EE.

Nat Genet. 2007 Nov;39(11):1361-8. Epub 2007 Oct 7.PMID: 17922013 [PubMed - indexed for MEDLINE]Related articles

How segmental duplications shape our genome: recent evolution of ABCC6 and PKD1 Mendelian disease genes.

Symmons O, Váradi A, Arányi T.

Mol Biol Evol. 2008 Dec;25(12):2601-13. Epub 2008 Sep 12.PMID: 18791038 [PubMed - indexed for MEDLINE]Related articlesFree article

Enrichment of segmental duplications in regions of breaks of synteny between the human and mouse genomes suggest their involvement in evolutionary rearrangements.

Armengol L, Pujana MA, Cheung J, Scherer SW, Estivill X.

Hum Mol Genet. 2003 Sep 1;12(17):2201-8. Epub 2003 Jul 8.PMID: 12915466 [PubMed - indexed for MEDLINE]Related articlesFree article

Analysis of recent segmental duplications in the bovine genome.

Liu GE, Ventura M, Cellamare A, Chen L, Cheng Z, Zhu B, Li C, Song J, Eichler EE.

BMC Genomics. 2009 Dec 1;10:571.PMID: 19951423 [PubMed - indexed for MEDLINE]Related articlesFree article

Recent segmental and gene duplications in the mouse genome.

Cheung J, Wilson MD, Zhang J, Khaja R, MacDonald JR, Heng HH, Koop BF, Scherer SW.

Genome Biol. 2003;4(8):R47. Epub 2003 Jul 9.PMID: 12914656 [PubMed - indexed for MEDLINE]Related articlesFree article

Analysis of segmental duplications reveals a distinct pattern of continuation-of-synteny between human and mouse genomes.

Mehan MR, Almonte M, Slaten E, Freimer NB, Rao PN, Ophoff RA.

Hum Genet. 2007 Mar;121(1):93-100. Epub 2006 Nov 8.PMID: 17091282 [PubMed - indexed for MEDLINE]Related articles

The origins and impact of primate segmental duplications.

Marques-Bonet T, Girirajan S, Eichler EE.

Trends Genet. 2009 Oct;25(10):443-54. Epub 2009 Sep 30. Review.PMID: 19796838 [PubMed - indexed for MEDLINE]Related articles

Complex patterns of copy number variation at sites of segmental duplications: an important category of structural variation in the human genome.

Goidts V, Cooper DN, Armengol L, Schempp W, Conroy J, Estivill X, Nowak N, Hameister H, Kehrer-Sawatzki H.

Hum Genet. 2006 Sep;120(2):270-84. Epub 2006 Jul 13.PMID: 16838144 [PubMed - indexed for MEDLINE]Related articles

Large-scale inference of the point mutational spectrum in human segmental duplications.

Nakken S, Rødland EA, Rognes T, Hovig E.

BMC Genomics. 2009 Jan 22;10:43.PMID: 19161616 [PubMed - indexed for MEDLINE]Related articlesFree article

Determination of enriched histone modifications in non-genic portions of the human genome.

Rosenfeld JA, Wang Z, Schones DE, Zhao K, DeSalle R, Zhang MQ.

BMC Genomics. 2009 Mar 31;10:143.PMID: 19335899 [PubMed - indexed for MEDLINE]Related articlesFree article

A preliminary comparative analysis of primate segmental duplications shows elevated substitution rates and a great-ape expansion of intrachromosomal duplications.

She X, Liu G, Ventura M, Zhao S, Misceo D, Roberto R, Cardone MF, Rocchi M; NISC Comparative Sequencing Program, Green ED, Archidiacano N, Eichler EE.

Genome Res. 2006 May;16(5):576-83. Epub 2006 Apr 10.PMID: 16606706 [PubMed - indexed for MEDLINE]Related articlesFree article

Genome-wide detection of segmental duplications and potential assembly errors in the human genome sequence.

Cheung J, Estivill X, Khaja R, MacDonald JR, Lau K, Tsui LC, Scherer SW.

Genome Biol. 2003;4(4):R25. Epub 2003 Mar 17.PMID: 12702206 [PubMed - indexed for MEDLINE]Related articlesFree article

Quantifying the mechanisms for segmental duplications in mammalian genomes by statistical analysis and modeling.

Zhou Y, Mishra B.

Proc Natl Acad Sci U S A. 2005 Mar 15;102(11):4051-6. Epub 2005 Mar 1.PMID: 15741274 [PubMed - indexed for MEDLINE]Related articlesFree article

Using a pericentromeric interspersed repeat to recapitulate the phylogeny and expansion of human centromeric segmental duplications.

Horvath JE, Gulden CL, Bailey JA, Yohn C, McPherson JD, Prescott A, Roe BA, de Jong PJ, Ventura M, Misceo D, Archidiacono N, Zhao S, Schwartz S, Rocchi M, Eichler EE.

Mol Biol Evol. 2003 Sep;20(9):1463-79. Epub 2003 May 30.PMID: 12777517 [PubMed - indexed for MEDLINE]Related articlesFree article

High divergence in primate-specific duplicated regions: human and chimpanzee chorionic gonadotropin beta genes.

Hallast P, Saarela J, Palotie A, Laan M.

BMC Evol Biol. 2008 Jul 7;8:195.PMID: 18606016 [PubMed - indexed for MEDLINE]Related articlesFree article

Segmental duplications: organization and impact within the current human genome project assembly.

Bailey JA, Yavor AM, Massa HF, Trask BJ, Eichler EE.

Genome Res. 2001 Jun;11(6):1005-17.PMID: 11381028 [PubMed - indexed for MEDLINE]Related articlesFree article

Segmental duplication density decrease with distance to human-mouse breaks of synteny.

Sainz J, Rovensky P, Gudjonsson SA, Thorleifsson G, Stefansson K, Gulcher JR.

Eur J Hum Genet. 2006 Feb;14(2):216-21.PMID: 16306878 [PubMed - indexed for MEDLINE]Related articlesFree article