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    Results: 1 to 20 of 86

    1.

    GMODWeb: a web framework for the Generic Model Organism Database.

    O'Connor BD, Day A, Cain S, Arnaiz O, Sperling L, Stein LD.

    Genome Biol. 2008;9(6):R102. Epub 2008 Jun 20.

    PMID:
    18570664
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    2.

    The generic genome browser: a building block for a model organism system database.

    Stein LD, Mungall C, Shu S, Caudy M, Mangone M, Day A, Nickerson E, Stajich JE, Harris TW, Arva A, Lewis S.

    Genome Res. 2002 Oct;12(10):1599-610.

    PMID:
    12368253
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    3.

    A Chado case study: an ontology-based modular schema for representing genome-associated biological information.

    Mungall CJ, Emmert DB; FlyBase Consortium.

    Bioinformatics. 2007 Jul 1;23(13):i337-46.

    PMID:
    17646315
    [PubMed - indexed for MEDLINE]
    Free Article
    4.

    Xanthusbase: adapting wikipedia principles to a model organism database.

    Arshinoff BI, Suen G, Just EM, Merchant SM, Kibbe WA, Chisholm RL, Welch RD.

    Nucleic Acids Res. 2007 Jan;35(Database issue):D422-6. Epub 2006 Nov 7.

    PMID:
    17090585
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    5.

    Artemis and ACT: viewing, annotating and comparing sequences stored in a relational database.

    Carver T, Berriman M, Tivey A, Patel C, Böhme U, Barrell BG, Parkhill J, Rajandream MA.

    Bioinformatics. 2008 Dec 1;24(23):2672-6. Epub 2008 Oct 9.

    PMID:
    18845581
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    6.

    dictyBase, the model organism database for Dictyostelium discoideum.

    Chisholm RL, Gaudet P, Just EM, Pilcher KE, Fey P, Merchant SN, Kibbe WA.

    Nucleic Acids Res. 2006 Jan 1;34(Database issue):D423-7.

    PMID:
    16381903
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    7.

    AphidBase: a centralized bioinformatic resource for annotation of the pea aphid genome.

    Legeai F, Shigenobu S, Gauthier JP, Colbourne J, Rispe C, Collin O, Richards S, Wilson AC, Murphy T, Tagu D.

    Insect Mol Biol. 2010 Mar;19 Suppl 2:5-12.

    PMID:
    20482635
    [PubMed - indexed for MEDLINE]
    8.

    The Sol Genomics Network (solgenomics.net): growing tomatoes using Perl.

    Bombarely A, Menda N, Tecle IY, Buels RM, Strickler S, Fischer-York T, Pujar A, Leto J, Gosselin J, Mueller LA.

    Nucleic Acids Res. 2011 Jan;39(Database issue):D1149-55. Epub 2010 Oct 8.

    PMID:
    20935049
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    9.

    The Rat Genome Database 2009: variation, ontologies and pathways.

    Dwinell MR, Worthey EA, Shimoyama M, Bakir-Gungor B, DePons J, Laulederkind S, Lowry T, Nigram R, Petri V, Smith J, Stoddard A, Twigger SN, Jacob HJ; RGD Team.

    Nucleic Acids Res. 2009 Jan;37(Database issue):D744-9. Epub 2008 Nov 7.

    PMID:
    18996890
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    10.

    An ontology for cell types.

    Bard J, Rhee SY, Ashburner M.

    Genome Biol. 2005;6(2):R21. Epub 2005 Jan 14.

    PMID:
    15693950
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    11.

    NemaPath: online exploration of KEGG-based metabolic pathways for nematodes.

    Wylie T, Martin J, Abubucker S, Yin Y, Messina D, Wang Z, McCarter JP, Mitreva M.

    BMC Genomics. 2008 Nov 4;9:525.

    PMID:
    18983679
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    12.

    Biological Network Inference and analysis using SEBINI and CABIN.

    Taylor R, Singhal M.

    Methods Mol Biol. 2009;541:551-76. Review.

    PMID:
    19381531
    [PubMed - indexed for MEDLINE]
    13.

    FlyBase : a database for the Drosophila research community.

    Drysdale R; FlyBase Consortium.

    Methods Mol Biol. 2008;420:45-59. Review.

    PMID:
    18641940
    [PubMed - indexed for MEDLINE]
    14.

    GOfetcher: a database with complex searching facility for gene ontology.

    Pirooznia M, Habib T, Perkins EJ, Deng Y.

    Bioinformatics. 2008 Nov 1;24(21):2561-3. Epub 2008 Aug 26.

    PMID:
    18728045
    [PubMed - indexed for MEDLINE]
    Free Article
    15.

    PHIDIAS: a pathogen-host interaction data integration and analysis system.

    Xiang Z, Tian Y, He Y.

    Genome Biol. 2007;8(7):R150.

    PMID:
    17663773
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    16.

    Implementation of GenePattern within the Stanford Microarray Database.

    Hubble J, Demeter J, Jin H, Mao M, Nitzberg M, Reddy TB, Wymore F, Zachariah ZK, Sherlock G, Ball CA.

    Nucleic Acids Res. 2009 Jan;37(Database issue):D898-901. Epub 2008 Oct 25.

    PMID:
    18953035
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    17.

    ChlamyCyc: an integrative systems biology database and web-portal for Chlamydomonas reinhardtii.

    May P, Christian JO, Kempa S, Walther D.

    BMC Genomics. 2009 May 4;10:209.

    PMID:
    19409111
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    18.

    iBarcode.org: web-based molecular biodiversity analysis.

    Singer GA, Hajibabaei M.

    BMC Bioinformatics. 2009 Jun 16;10 Suppl 6:S14.

    PMID:
    19534739
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    19.

    Generic HTML Form Processor: A versatile PHP script to save web-collected data into a MySQL database.

    Göritz AS, Birnbaum MH.

    Behav Res Methods. 2005 Nov;37(4):703-10.

    PMID:
    16629305
    [PubMed - indexed for MEDLINE]
    20.

    ProteoWizard: open source software for rapid proteomics tools development.

    Kessner D, Chambers M, Burke R, Agus D, Mallick P.

    Bioinformatics. 2008 Nov 1;24(21):2534-6. Epub 2008 Jul 7.

    PMID:
    18606607
    [PubMed - indexed for MEDLINE]
    Free PMC Article

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