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Flow: Statistics, visualization and informatics for flow cytometry.

Frelinger J, Kepler TB, Chan C.

Source Code Biol Med. 2008 Jun 17;3:10.PMID: 18559108 [PubMed - in process]Related articlesFree article

flowCore: a Bioconductor package for high throughput flow cytometry.

Hahne F, LeMeur N, Brinkman RR, Ellis B, Haaland P, Sarkar D, Spidlen J, Strain E, Gentleman R.

BMC Bioinformatics. 2009 Apr 9;10:106.PMID: 19358741 [PubMed - indexed for MEDLINE]Related articlesFree article

EMAAS: an extensible grid-based rich internet application for microarray data analysis and management.

Barton G, Abbott J, Chiba N, Huang DW, Huang Y, Krznaric M, Mack-Smith J, Saleem A, Sherman BT, Tiwari B, Tomlinson C, Aitman T, Darlington J, Game L, Sternberg MJ, Butcher SA.

BMC Bioinformatics. 2008 Nov 25;9:493.PMID: 19032776 [PubMed - indexed for MEDLINE]Related articlesFree article

flowClust: a Bioconductor package for automated gating of flow cytometry data.

Lo K, Hahne F, Brinkman RR, Gottardo R.

BMC Bioinformatics. 2009 May 14;10:145.PMID: 19442304 [PubMed - indexed for MEDLINE]Related articlesFree article

WebFlow: a software package for high-throughput analysis of flow cytometry data.

Hammer MM, Kotecha N, Irish JM, Nolan GP, Krutzik PO.

Assay Drug Dev Technol. 2009 Feb;7(1):44-55.PMID: 19187010 [PubMed - indexed for MEDLINE]Related articles

Scalable analysis of flow cytometry data using R/Bioconductor.

Klinke DJ 2nd, Brundage KM.

Cytometry A. 2009 Aug;75(8):699-706.PMID: 19582872 [PubMed - indexed for MEDLINE]Related articles

FlowFP: A Bioconductor Package for Fingerprinting Flow Cytometric Data.

Rogers WT, Holyst HA.

Adv Bioinformatics. 2009:193947. Epub 2009 Sep 24.PMID: 19956416 [PubMed - in process]Related articlesFree article

Bridging the Divide between Manual Gating and Bioinformatics with the Bioconductor Package flowFlowJo.

Gosink JJ, Means GD, Rees WA, Su C, Rand HA.

Adv Bioinformatics. 2009:809469. Epub 2009 Oct 7.PMID: 19956421 [PubMed - in process]Related articlesFree article

GenomeGraphs: integrated genomic data visualization with R.

Durinck S, Bullard J, Spellman PT, Dudoit S.

BMC Bioinformatics. 2009 Jan 6;10:2.PMID: 19123956 [PubMed - indexed for MEDLINE]Related articlesFree article

Using Free and Open-Source Bioconductor Packages to Analyze Array Comparative Genomics Hybridization (aCGH) Data.

Lin S, Du P, Jafari N, Ouchi T.

Curr Genomics. 2009 Mar;10(1):60-3.PMID: 19721812 [PubMed - in process]Related articlesFree article

Analysis of High-Throughput Flow Cytometry Data Using plateCore.

Strain E, Hahne F, Brinkman RR, Haaland P.

Adv Bioinformatics. 2009:356141. Epub 2009 Oct 11.PMID: 19956418 [PubMed - in process]Related articlesFree article

Development of an automated analysis system for data from flow cytometric intracellular cytokine staining assays from clinical vaccine trials.

Shulman N, Bellew M, Snelling G, Carter D, Huang Y, Li H, Self SG, McElrath MJ, De Rosa SC.

Cytometry A. 2008 Sep;73(9):847-56.PMID: 18615598 [PubMed - indexed for MEDLINE]Related articlesFree article

RGG: a general GUI Framework for R scripts.

Visne I, Dilaveroglu E, Vierlinger K, Lauss M, Yildiz A, Weinhaeusel A, Noehammer C, Leisch F, Kriegner A.

BMC Bioinformatics. 2009 Mar 2;10:74.PMID: 19254356 [PubMed - indexed for MEDLINE]Related articlesFree article

Automics: an integrated platform for NMR-based metabonomics spectral processing and data analysis.

Wang T, Shao K, Chu Q, Ren Y, Mu Y, Qu L, He J, Jin C, Xia B.

BMC Bioinformatics. 2009 Mar 16;10:83.PMID: 19291281 [PubMed - indexed for MEDLINE]Related articlesFree article

ArrayPlex: distributed, interactive and programmatic access to genome sequence, annotation, ontology, and analytical toolsets.

Killion PJ, Iyer VR.

Genome Biol. 2008;9(11):R159. Epub 2008 Nov 12.PMID: 19014503 [PubMed - indexed for MEDLINE]Related articlesFree article

Bayesian clustering of flow cytometry data for the diagnosis of B-chronic lymphocytic leukemia.

Lakoumentas J, Drakos J, Karakantza M, Nikiforidis GC, Sakellaropoulos GC.

J Biomed Inform. 2009 Apr;42(2):251-61. Epub 2008 Dec 6.PMID: 19084613 [PubMed - indexed for MEDLINE]Related articles

Analysis of clinical flow cytometric immunophenotyping data by clustering on statistical manifolds: Treating flow cytometry data as high-dimensional objects.

Finn WG, Carter KM, Raich R, Stoolman LM, Hero AO.

Cytometry B Clin Cytom. 2008 Jul 18;76B(1):1-7. [Epub ahead of print]PMID: 18642311 [PubMed - as supplied by publisher]Related articlesFree article

The state and profile of open source software projects in health and medical informatics.

Janamanchi B, Katsamakas E, Raghupathi W, Gao W.

Int J Med Inform. 2009 Jul;78(7):457-72. Epub 2009 Mar 25.PMID: 19321384 [PubMed - indexed for MEDLINE]Related articles

Decon2LS: An open-source software package for automated processing and visualization of high resolution mass spectrometry data.

Jaitly N, Mayampurath A, Littlefield K, Adkins JN, Anderson GA, Smith RD.

BMC Bioinformatics. 2009 Mar 17;10:87.PMID: 19292916 [PubMed - indexed for MEDLINE]Related articlesFree article

Analyzing gene perturbation screens with nested effects models in R and bioconductor.

Fröhlich H, Beissbarth T, Tresch A, Kostka D, Jacob J, Spang R, Markowetz F.

Bioinformatics. 2008 Nov 1;24(21):2549-50. Epub 2008 Aug 21.PMID: 18718939 [PubMed - indexed for MEDLINE]Related articlesFree article