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    Results: 1 to 20 of 116

    1.

    Genome-wide identification of coding and non-coding conserved sequence tags in human and mouse genomes.

    Mignone F, Anselmo A, Donvito G, Maggi GP, Grillo G, Pesole G.

    BMC Genomics. 2008 Jun 11;9:277.PMID: 18547402 [PubMed - indexed for MEDLINE]Related articlesFree article

    3.

    Highly conserved non-coding sequences are associated with vertebrate development.

    Woolfe A, Goodson M, Goode DK, Snell P, McEwen GK, Vavouri T, Smith SF, North P, Callaway H, Kelly K, Walter K, Abnizova I, Gilks W, Edwards YJ, Cooke JE, Elgar G.

    PLoS Biol. 2005 Jan;3(1):e7. Epub 2004 Nov 11.PMID: 15630479 [PubMed - indexed for MEDLINE]Related articlesFree article

    4.

    Computational identification of protein coding potential of conserved sequence tags through cross-species evolutionary analysis.

    Mignone F, Grillo G, Liuni S, Pesole G.

    Nucleic Acids Res. 2003 Aug 1;31(15):4639-45.PMID: 12888525 [PubMed - indexed for MEDLINE]Related articlesFree article

    5.

    Characterization of 954 bovine full-CDS cDNA sequences.

    Harhay GP, Sonstegard TS, Keele JW, Heaton MP, Clawson ML, Snelling WM, Wiedmann RT, Van Tassell CP, Smith TP.

    BMC Genomics. 2005 Nov 23;6:166.PMID: 16305752 [PubMed - indexed for MEDLINE]Related articlesFree article

    6.

    Conserved introns reveal novel transcripts in Drosophila melanogaster.

    Hiller M, Findeiss S, Lein S, Marz M, Nickel C, Rose D, Schulz C, Backofen R, Prohaska SJ, Reuter G, Stadler PF.

    Genome Res. 2009 Jul;19(7):1289-300. Epub 2009 May 20.PMID: 19458021 [PubMed - indexed for MEDLINE]Related articles

    7.

    High-throughput, kingdom-wide prediction and annotation of bacterial non-coding RNAs.

    Livny J, Teonadi H, Livny M, Waldor MK.

    PLoS One. 2008 Sep 12;3(9):e3197. Erratum in: PLoS ONE. 2008;3(11). doi: 10.1371/annotation/a03e1870-1dd7-4c16-8c46-2268eeb2a50a. PMID: 18787707 [PubMed - indexed for MEDLINE]Related articlesFree article

    8.

    Detecting conserved coding genomic regions through signal processing of nucleotide substitution patterns.

    Ré M, Pavesi G.

    Artif Intell Med. 2009 Feb-Mar;45(2-3):117-23. Epub 2008 Sep 21.PMID: 18809300 [PubMed - indexed for MEDLINE]Related articles

    9.

    Comparative genomics in cyprinids: common carp ESTs help the annotation of the zebrafish genome.

    Christoffels A, Bartfai R, Srinivasan H, Komen H, Orban L.

    BMC Bioinformatics. 2006 Dec 18;7 Suppl 5:S2.PMID: 17254304 [PubMed - indexed for MEDLINE]Related articlesFree article

    10.

    Big genomes facilitate the comparative identification of regulatory elements.

    Peterson BK, Hare EE, Iyer VN, Storage S, Conner L, Papaj DR, Kurashima R, Jang E, Eisen MB.

    PLoS One. 2009;4(3):e4688. Epub 2009 Mar 4.PMID: 19259274 [PubMed - indexed for MEDLINE]Related articlesFree article

    11.

    GenoMiner: a tool for genome-wide search of coding and non-coding conserved sequence tags.

    Castrignanò T, De Meo PD, Grillo G, Liuni S, Mignone F, Talamo IG, Pesole G.

    Bioinformatics. 2006 Feb 15;22(4):497-9. Epub 2005 Nov 2.PMID: 16267081 [PubMed - indexed for MEDLINE]Related articlesFree article

    12.

    The consensus coding sequence (CCDS) project: Identifying a common protein-coding gene set for the human and mouse genomes.

    Pruitt KD, Harrow J, Harte RA, Wallin C, Diekhans M, Maglott DR, Searle S, Farrell CM, Loveland JE, Ruef BJ, Hart E, Suner MM, Landrum MJ, Aken B, Ayling S, Baertsch R, Fernandez-Banet J, Cherry JL, Curwen V, Dicuccio M, Kellis M, Lee J, Lin MF, Schuster M, Shkeda A, Amid C, Brown G, Dukhanina O, Frankish A, Hart J, Maidak BL, Mudge J, Murphy MR, Murphy T, Rajan J, Rajput B, Riddick LD, Snow C, Steward C, Webb D, Weber JA, Wilming L, Wu W, Birney E, Haussler D, Hubbard T, Ostell J, Durbin R, Lipman D.

    Genome Res. 2009 Jul;19(7):1316-23. Epub 2009 Jun 4. Erratum in: Genome Res. 2009 Aug;19(8):1506. PMID: 19498102 [PubMed - indexed for MEDLINE]Related articles

    13.

    Identification and analysis of Arabidopsis expressed sequence tags characteristic of non-coding RNAs.

    MacIntosh GC, Wilkerson C, Green PJ.

    Plant Physiol. 2001 Nov;127(3):765-76.PMID: 11706161 [PubMed - indexed for MEDLINE]Related articlesFree article

    14.

    Enrichment of transcriptional regulatory sites in non-coding genomic region.

    Xue W, Wang J, Shen Z, Zhu H.

    Bioinformatics. 2004 Mar 1;20(4):569-75. Epub 2004 Jan 22.PMID: 14990453 [PubMed - indexed for MEDLINE]Related articlesFree article

    15.

    Similarity-based gene detection: using COGs to find evolutionarily-conserved ORFs.

    Powell BC, Hutchison CA 3rd.

    BMC Bioinformatics. 2006 Jan 19;7:31.PMID: 16423288 [PubMed - indexed for MEDLINE]Related articlesFree article

    16.

    Initial sequencing and comparative analysis of the mouse genome.

    Mouse Genome Sequencing Consortium, Waterston RH, Lindblad-Toh K, Birney E, Rogers J, Abril JF, Agarwal P, Agarwala R, Ainscough R, Alexandersson M, An P, Antonarakis SE, Attwood J, Baertsch R, Bailey J, Barlow K, Beck S, Berry E, Birren B, Bloom T, Bork P, Botcherby M, Bray N, Brent MR, Brown DG, Brown SD, Bult C, Burton J, Butler J, Campbell RD, Carninci P, Cawley S, Chiaromonte F, Chinwalla AT, Church DM, Clamp M, Clee C, Collins FS, Cook LL, Copley RR, Coulson A, Couronne O, Cuff J, Curwen V, Cutts T, Daly M, David R, Davies J, Delehaunty KD, Deri J, Dermitzakis ET, Dewey C, Dickens NJ, Diekhans M, Dodge S, Dubchak I, Dunn DM, Eddy SR, Elnitski L, Emes RD, Eswara P, Eyras E, Felsenfeld A, Fewell GA, Flicek P, Foley K, Frankel WN, Fulton LA, Fulton RS, Furey TS, Gage D, Gibbs RA, Glusman G, Gnerre S, Goldman N, Goodstadt L, Grafham D, Graves TA, Green ED, Gregory S, Guigó R, Guyer M, Hardison RC, Haussler D, Hayashizaki Y, Hillier LW, Hinrichs A, Hlavina W, Holzer T, Hsu F, Hua A, Hubbard T, Hunt A, Jackson I, Jaffe DB, Johnson LS, Jones M, Jones TA, Joy A, Kamal M, Karlsson EK, Karolchik D, Kasprzyk A, Kawai J, Keibler E, Kells C, Kent WJ, Kirby A, Kolbe DL, Korf I, Kucherlapati RS, Kulbokas EJ, Kulp D, Landers T, Leger JP, Leonard S, Letunic I, Levine R, Li J, Li M, Lloyd C, Lucas S, Ma B, Maglott DR, Mardis ER, Matthews L, Mauceli E, Mayer JH, McCarthy M, McCombie WR, McLaren S, McLay K, McPherson JD, Meldrim J, Meredith B, Mesirov JP, Miller W, Miner TL, Mongin E, Montgomery KT, Morgan M, Mott R, Mullikin JC, Muzny DM, Nash WE, Nelson JO, Nhan MN, Nicol R, Ning Z, Nusbaum C, O'Connor MJ, Okazaki Y, Oliver K, Overton-Larty E, Pachter L, Parra G, Pepin KH, Peterson J, Pevzner P, Plumb R, Pohl CS, Poliakov A, Ponce TC, Ponting CP, Potter S, Quail M, Reymond A, Roe BA, Roskin KM, Rubin EM, Rust AG, Santos R, Sapojnikov V, Schultz B, Schultz J, Schwartz MS, Schwartz S, Scott C, Seaman S, Searle S, Sharpe T, Sheridan A, Shownkeen R, Sims S, Singer JB, Slater G, Smit A, Smith DR, Spencer B, Stabenau A, Stange-Thomann N, Sugnet C, Suyama M, Tesler G, Thompson J, Torrents D, Trevaskis E, Tromp J, Ucla C, Ureta-Vidal A, Vinson JP, Von Niederhausern AC, Wade CM, Wall M, Weber RJ, Weiss RB, Wendl MC, West AP, Wetterstrand K, Wheeler R, Whelan S, Wierzbowski J, Willey D, Williams S, Wilson RK, Winter E, Worley KC, Wyman D, Yang S, Yang SP, Zdobnov EM, Zody MC, Lander ES.

    Nature. 2002 Dec 5;420(6915):520-62.PMID: 12466850 [PubMed - indexed for MEDLINE]Related articles

    17.

    Enrichment of regulatory signals in conserved non-coding genomic sequence.

    Levy S, Hannenhalli S, Workman C.

    Bioinformatics. 2001 Oct;17(10):871-7.PMID: 11673231 [PubMed - indexed for MEDLINE]Related articlesFree article

    18.

    NemaFootPrinter: a web based software for the identification of conserved non-coding genome sequence regions between C. elegans and C. briggsae.

    Rambaldi D, Guffanti A, Morandi P, Cassata G.

    BMC Bioinformatics. 2005 Dec 1;6 Suppl 4:S22.PMID: 16351749 [PubMed - indexed for MEDLINE]Related articlesFree article

    19.

    A systematic search for new mammalian noncoding RNAs indicates little conserved intergenic transcription.

    Babak T, Blencowe BJ, Hughes TR.

    BMC Genomics. 2005 Aug 5;6:104.PMID: 16083503 [PubMed - indexed for MEDLINE]Related articlesFree article

    20.

    Numerous potentially functional but non-genic conserved sequences on human chromosome 21.

    Dermitzakis ET, Reymond A, Lyle R, Scamuffa N, Ucla C, Deutsch S, Stevenson BJ, Flegel V, Bucher P, Jongeneel CV, Antonarakis SE.

    Nature. 2002 Dec 5;420(6915):578-82.PMID: 12466853 [PubMed - indexed for MEDLINE]Related articles

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