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    Results: 1 to 20 of 90

    1.

    A mouse plasma peptide atlas as a resource for disease proteomics.

    Zhang Q, Menon R, Deutsch EW, Pitteri SJ, Faca VM, Wang H, Newcomb LF, Depinho RA, Bardeesy N, Dinulescu D, Hung KE, Kucherlapati R, Jacks T, Politi K, Aebersold R, Omenn GS, States DJ, Hanash SM.

    Genome Biol. 2008;9(6):R93. Epub 2008 Jun 3.

    PMID:
    18522751
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    2.

    Novel gene and gene model detection using a whole genome open reading frame analysis in proteomics.

    Fermin D, Allen BB, Blackwell TW, Menon R, Adamski M, Xu Y, Ulintz P, Omenn GS, States DJ.

    Genome Biol. 2006;7(4):R35. Epub 2006 Apr 28.

    PMID:
    16646984
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    3.

    PEPPI: a peptidomic database of human protein isoforms for proteomics experiments.

    Zhou A, Zhang F, Chen JY.

    BMC Bioinformatics. 2010 Oct 7;11 Suppl 6:S7.

    PMID:
    20946618
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    4.

    Characterization of the human blood plasma proteome.

    Shen Y, Kim J, Strittmatter EF, Jacobs JM, Camp DG 2nd, Fang R, Tolié N, Moore RJ, Smith RD.

    Proteomics. 2005 Oct;5(15):4034-45.

    PMID:
    16152657
    [PubMed - indexed for MEDLINE]
    5.

    The APEX Quantitative Proteomics Tool: generating protein quantitation estimates from LC-MS/MS proteomics results.

    Braisted JC, Kuntumalla S, Vogel C, Marcotte EM, Rodrigues AR, Wang R, Huang ST, Ferlanti ES, Saeed AI, Fleischmann RD, Peterson SN, Pieper R.

    BMC Bioinformatics. 2008 Dec 9;9:529.

    PMID:
    19068132
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    6.

    A comprehensive proteomics and genomics analysis reveals novel transmembrane proteins in human platelets and mouse megakaryocytes including G6b-B, a novel immunoreceptor tyrosine-based inhibitory motif protein.

    Senis YA, Tomlinson MG, García A, Dumon S, Heath VL, Herbert J, Cobbold SP, Spalton JC, Ayman S, Antrobus R, Zitzmann N, Bicknell R, Frampton J, Authi KS, Martin A, Wakelam MJ, Watson SP.

    Mol Cell Proteomics. 2007 Mar;6(3):548-64. Epub 2006 Dec 23.

    PMID:
    17186946
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    7.

    Integration with the human genome of peptide sequences obtained by high-throughput mass spectrometry.

    Desiere F, Deutsch EW, Nesvizhskii AI, Mallick P, King NL, Eng JK, Aderem A, Boyle R, Brunner E, Donohoe S, Fausto N, Hafen E, Hood L, Katze MG, Kennedy KA, Kregenow F, Lee H, Lin B, Martin D, Ranish JA, Rawlings DJ, Samelson LE, Shiio Y, Watts JD, Wollscheid B, Wright ME, Yan W, Yang L, Yi EC, Zhang H, Aebersold R.

    Genome Biol. 2005;6(1):R9. Epub 2004 Dec 10.

    PMID:
    15642101
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    8.

    Shotgun proteomics aids discovery of novel protein-coding genes, alternative splicing, and "resurrected" pseudogenes in the mouse genome.

    Brosch M, Saunders GI, Frankish A, Collins MO, Yu L, Wright J, Verstraten R, Adams DJ, Harrow J, Choudhary JS, Hubbard T.

    Genome Res. 2011 May;21(5):756-67. Epub 2011 Apr 1.

    PMID:
    21460061
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    9.

    A compatible exon-exon junction database for the identification of exon skipping events using tandem mass spectrum data.

    Mo F, Hong X, Gao F, Du L, Wang J, Omenn GS, Lin B.

    BMC Bioinformatics. 2008 Dec 16;9:537.

    PMID:
    19087293
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    10.

    LC-MS/MS-based proteome profiling in Daphnia pulex and Daphnia longicephala: the Daphnia pulex genome database as a key for high throughput proteomics in Daphnia.

    Fröhlich T, Arnold GJ, Fritsch R, Mayr T, Laforsch C.

    BMC Genomics. 2009 Apr 21;10:171.

    PMID:
    19383153
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    11.

    Improving peptide identification using an empirical peptide retention time database.

    Sun W, Zhang L, Yang R, Shao C, Zhang Z, Gao Y.

    Rapid Commun Mass Spectrom. 2009 Jan;23(1):109-18.

    PMID:
    19065623
    [PubMed - indexed for MEDLINE]
    12.

    Shotgun protein identification and quantification by mass spectrometry in neuroproteomics.

    Lu B, Xu T, Park SK, McClatchy DB, Liao L, Yates JR 3rd.

    Methods Mol Biol. 2009;566:229-59.

    PMID:
    20058176
    [PubMed - indexed for MEDLINE]
    13.

    Human Plasma PeptideAtlas.

    Deutsch EW, Eng JK, Zhang H, King NL, Nesvizhskii AI, Lin B, Lee H, Yi EC, Ossola R, Aebersold R.

    Proteomics. 2005 Aug;5(13):3497-500.

    PMID:
    16052627
    [PubMed - indexed for MEDLINE]
    14.

    Plasma Proteome Database as a resource for proteomics research.

    Muthusamy B, Hanumanthu G, Suresh S, Rekha B, Srinivas D, Karthick L, Vrushabendra BM, Sharma S, Mishra G, Chatterjee P, Mangala KS, Shivashankar HN, Chandrika KN, Deshpande N, Suresh M, Kannabiran N, Niranjan V, Nalli A, Prasad TS, Arun KS, Reddy R, Chandran S, Jadhav T, Julie D, Mahesh M, John SL, Palvankar K, Sudhir D, Bala P, Rashmi NS, Vishnupriya G, Dhar K, Reshma S, Chaerkady R, Gandhi TK, Harsha HC, Mohan SS, Deshpande KS, Sarker M, Pandey A.

    Proteomics. 2005 Aug;5(13):3531-6.

    PMID:
    16041672
    [PubMed - indexed for MEDLINE]
    15.

    High-throughput analysis of rat liver plasma membrane proteome by a nonelectrophoretic in-gel tryptic digestion coupled with mass spectrometry identification.

    Cao R, He Q, Zhou J, He Q, Liu Z, Wang X, Chen P, Xie J, Liang S.

    J Proteome Res. 2008 Feb;7(2):535-45. Epub 2008 Jan 1.

    PMID:
    18166008
    [PubMed - indexed for MEDLINE]
    16.

    The proteome of Toxoplasma gondii: integration with the genome provides novel insights into gene expression and annotation.

    Xia D, Sanderson SJ, Jones AR, Prieto JH, Yates JR, Bromley E, Tomley FM, Lal K, Sinden RE, Brunk BP, Roos DS, Wastling JM.

    Genome Biol. 2008;9(7):R116. Epub 2008 Jul 21.

    PMID:
    18644147
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    17.

    GAPP: a fully automated software for the confident identification of human peptides from tandem mass spectra.

    Shadforth I, Xu W, Crowther D, Bessant C.

    J Proteome Res. 2006 Oct;5(10):2849-52.

    PMID:
    17022656
    [PubMed - indexed for MEDLINE]
    18.

    Identification of bacteria using tandem mass spectrometry combined with a proteome database and statistical scoring.

    Dworzanski JP, Snyder AP, Chen R, Zhang H, Wishart D, Li L.

    Anal Chem. 2004 Apr 15;76(8):2355-66.

    PMID:
    15080748
    [PubMed - indexed for MEDLINE]
    19.

    Elective affinities--bioinformatic analysis of proteomic mass spectrometry data.

    Li X, Pizarro A, Grosser T.

    Arch Physiol Biochem. 2009 Dec;115(5):311-9. Review.

    PMID:
    19911947
    [PubMed - indexed for MEDLINE]
    20.

    Equivalence of protein inventories obtained from formalin-fixed paraffin-embedded and frozen tissue in multidimensional liquid chromatography-tandem mass spectrometry shotgun proteomic analysis.

    Sprung RW Jr, Brock JW, Tanksley JP, Li M, Washington MK, Slebos RJ, Liebler DC.

    Mol Cell Proteomics. 2009 Aug;8(8):1988-98. Epub 2009 May 24.

    PMID:
    19467989
    [PubMed - indexed for MEDLINE]
    Free PMC Article

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