PubMed

Validation of oligoarrays for quantitative exploration of the transcriptome.

Nygaard V, Liu F, Holden M, Kuo WP, Trimarchi J, Ohno-Machado L, Cepko CL, Frigessi A, Glad IK, Wiel MA, Hovig E, Lyng H.

BMC Genomics. 2008 May 30;9:258.PMID: 18513391 [PubMed - indexed for MEDLINE]Related articlesFree article

Deep analysis of cellular transcriptomes - LongSAGE versus classic MPSS.

Hene L, Sreenu VB, Vuong MT, Abidi SH, Sutton JK, Rowland-Jones SL, Davis SJ, Evans EJ.

BMC Genomics. 2007 Sep 24;8:333.PMID: 17892551 [PubMed - indexed for MEDLINE]Related articlesFree article

Deep and comparative analysis of the mycelium and appressorium transcriptomes of Magnaporthe grisea using MPSS, RL-SAGE, and oligoarray methods.

Gowda M, Venu RC, Raghupathy MB, Nobuta K, Li H, Wing R, Stahlberg E, Couglan S, Haudenschild CD, Dean R, Nahm BH, Meyers BC, Wang GL.

BMC Genomics. 2006 Dec 8;7:310.PMID: 17156450 [PubMed - indexed for MEDLINE]Related articlesFree article

Generation of longer 3' cDNA fragments from massively parallel signature sequencing tags.

Silva AP, Chen J, Carraro DM, Wang SM, Camargo AA.

Nucleic Acids Res. 2004 Jul 6;32(12):e94.PMID: 15247327 [PubMed - indexed for MEDLINE]Related articlesFree article

[Transcriptomes for serial analysis of gene expression]

Marti J, Piquemal D, Manchon L, Commes T.

J Soc Biol. 2002;196(4):303-7. Review. French. PMID: 12645300 [PubMed - indexed for MEDLINE]Related articles

A comparison of microarray and MPSS technology platforms for expression analysis of Arabidopsis.

Chen J, Agrawal V, Rattray M, West MA, St Clair DA, Michelmore RW, Coughlan SJ, Meyers BC.

BMC Genomics. 2007 Nov 12;8:414.PMID: 17997849 [PubMed - indexed for MEDLINE]Related articlesFree article

The impact of SNPs on the interpretation of SAGE and MPSS experimental data.

Silva AP, De Souza JE, Galante PA, Riggins GJ, De Souza SJ, Camargo AA.

Nucleic Acids Res. 2004 Nov 23;32(20):6104-10. Print 2004.PMID: 15562001 [PubMed - indexed for MEDLINE]Related articlesFree article

Comparative expression profiling in grape (Vitis vinifera) berries derived from frequency analysis of ESTs and MPSS signatures.

Iandolino A, Nobuta K, da Silva FG, Cook DR, Meyers BC.

BMC Plant Biol. 2008 May 12;8:53.PMID: 18474095 [PubMed - indexed for MEDLINE]Related articlesFree article

Analysis of tag-position bias in MPSS technology.

Chen J, Rattray M.

BMC Genomics. 2006 Apr 7;7:77.PMID: 16603069 [PubMed - indexed for MEDLINE]Related articlesFree article

Evaluation of the similarity of gene expression data estimated with SAGE and Affymetrix GeneChips.

van Ruissen F, Ruijter JM, Schaaf GJ, Asgharnegad L, Zwijnenburg DA, Kool M, Baas F.

BMC Genomics. 2005 Jun 14;6:91.PMID: 15955238 [PubMed - indexed for MEDLINE]Related articlesFree article

Mining SAGE data allows large-scale, sensitive screening of antisense transcript expression.

Quéré R, Manchon L, Lejeune M, Clément O, Pierrat F, Bonafoux B, Commes T, Piquemal D, Marti J.

Nucleic Acids Res. 2004 Nov 23;32(20):e163.PMID: 15561998 [PubMed - indexed for MEDLINE]Related articlesFree article

Comparison of oligonucleotide-microarray and serial analysis of gene expression (SAGE) in transcript profiling analysis of megakaryocytes derived from CD34+ cells.

Kim HL.

Exp Mol Med. 2003 Oct 31;35(5):460-6.PMID: 14646601 [PubMed - indexed for MEDLINE]Related articlesFree article

A combination of LongSAGE with Solexa sequencing is well suited to explore the depth and the complexity of transcriptome.

Hanriot L, Keime C, Gay N, Faure C, Dossat C, Wincker P, Scoté-Blachon C, Peyron C, Gandrillon O.

BMC Genomics. 2008 Sep 16;9:418.PMID: 18796152 [PubMed - indexed for MEDLINE]Related articlesFree article

Application of Affymetrix array and Massively Parallel Signature Sequencing for identification of genes involved in prostate cancer progression.

Oudes AJ, Roach JC, Walashek LS, Eichner LJ, True LD, Vessella RL, Liu AY.

BMC Cancer. 2005 Jul 22;5:86.PMID: 16042785 [PubMed - indexed for MEDLINE]Related articlesFree article

A rapid method for computationally inferring transcriptome coverage and microarray sensitivity.

Reverter A, McWilliam SM, Barris W, Dalrymple BP.

Bioinformatics. 2005 Jan 1;21(1):80-9. Epub 2004 Aug 12.PMID: 15308544 [PubMed - indexed for MEDLINE]Related articlesFree article

A comparison of gene expression profiles produced by SAGE, long SAGE, and oligonucleotide chips.

Lu J, Lal A, Merriman B, Nelson S, Riggins G.

Genomics. 2004 Oct;84(4):631-6.PMID: 15475240 [PubMed - indexed for MEDLINE]Related articles

A spatial dissection of the Arabidopsis floral transcriptome by MPSS.

Peiffer JA, Kaushik S, Sakai H, Arteaga-Vazquez M, Sanchez-Leon N, Ghazal H, Vielle-Calzada JP, Meyers BC.

BMC Plant Biol. 2008 Apr 21;8:43.PMID: 18426585 [PubMed - indexed for MEDLINE]Related articlesFree article

Molecular phenotype of zebrafish ovarian follicle by serial analysis of gene expression and proteomic profiling, and comparison with the transcriptomes of other animals.

Knoll-Gellida A, André M, Gattegno T, Forgue J, Admon A, Babin PJ.

BMC Genomics. 2006 Mar 9;7:46.PMID: 16526958 [PubMed - indexed for MEDLINE]Related articlesFree article

Limitations of mRNA amplification from small-size cell samples.

Nygaard V, Holden M, Løland A, Langaas M, Myklebost O, Hovig E.

BMC Genomics. 2005 Oct 27;6:147.PMID: 16253144 [PubMed - indexed for MEDLINE]Related articlesFree article

Real-time RT-PCR profiling of over 1400 Arabidopsis transcription factors: unprecedented sensitivity reveals novel root- and shoot-specific genes.

Czechowski T, Bari RP, Stitt M, Scheible WR, Udvardi MK.

Plant J. 2004 Apr;38(2):366-79.PMID: 15078338 [PubMed - indexed for MEDLINE]Related articles