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Introduction of an agent-based multi-scale modular architecture for dynamic knowledge representation of acute inflammation.

An G.

Theor Biol Med Model. 2008 May 27;5:11.PMID: 18505587 [PubMed - indexed for MEDLINE]Related articlesFree article

Detailed qualitative dynamic knowledge representation using a BioNetGen model of TLR-4 signaling and preconditioning.

An GC, Faeder JR.

Math Biosci. 2009 Jan;217(1):53-63. Epub 2008 Sep 12.PMID: 18835283 [PubMed - indexed for MEDLINE]Related articlesFree article

Dynamic knowledge representation using agent-based modeling: ontology instantiation and verification of conceptual models.

An G.

Methods Mol Biol. 2009;500:445-68.PMID: 19399435 [PubMed - indexed for MEDLINE]Related articles

In silico experiments of existing and hypothetical cytokine-directed clinical trials using agent-based modeling.

An G.

Crit Care Med. 2004 Oct;32(10):2050-60.PMID: 15483414 [PubMed - indexed for MEDLINE]Related articles

Translational systems biology using an agent-based approach for dynamic knowledge representation: An evolutionary paradigm for biomedical research.

An GC.

Wound Repair Regen. 2010 Jan-Feb;18(1):8-12.PMID: 20082675 [PubMed - in process]Related articles

Deciphering the complexity of acute inflammation using mathematical models.

Vodovotz Y.

Immunol Res. 2006;36(1-3):237-45. Review.PMID: 17337784 [PubMed - indexed for MEDLINE]Related articles

Multi-scale analysis of a household level agent-based model of landcover change.

Evans TP, Kelley H.

J Environ Manage. 2004 Aug;72(1-2):57-72.PMID: 15246574 [PubMed - indexed for MEDLINE]Related articles

A model of TLR4 signaling and tolerance using a qualitative, particle-event-based method: introduction of spatially configured stochastic reaction chambers (SCSRC).

An G.

Math Biosci. 2009 Jan;217(1):43-52. Epub 2008 Oct 11.PMID: 18950646 [PubMed - indexed for MEDLINE]Related articles

Agent-based modeling of endotoxin-induced acute inflammatory response in human blood leukocytes.

Dong X, Foteinou PT, Calvano SE, Lowry SF, Androulakis IP.

PLoS One. 2010 Feb 18;5(2):e9249.PMID: 20174629 [PubMed - in process]Related articlesFree article

Combining experiments with multi-cell agent-based modeling to study biological tissue patterning.

Thorne BC, Bailey AM, Peirce SM.

Brief Bioinform. 2007 Jul;8(4):245-57. Epub 2007 Jun 21. Review.PMID: 17584763 [PubMed - indexed for MEDLINE]Related articlesFree article

Concepts for developing a collaborative in silico model of the acute inflammatory response using agent-based modeling.

An G.

J Crit Care. 2006 Mar;21(1):105-10; discussion 110-1.PMID: 16616634 [PubMed - indexed for MEDLINE]Related articles

Translational systems biology: introduction of an engineering approach to the pathophysiology of the burn patient.

An G, Faeder J, Vodovotz Y.

J Burn Care Res. 2008 Mar-Apr;29(2):277-85. Review.PMID: 18354282 [PubMed - indexed for MEDLINE]Related articles

Mathematical models of the acute inflammatory response.

Vodovotz Y, Clermont G, Chow C, An G.

Curr Opin Crit Care. 2004 Oct;10(5):383-90. Review.PMID: 15385756 [PubMed - indexed for MEDLINE]Related articles

A patient-specific in silico model of inflammation and healing tested in acute vocal fold injury.

Li NY, Verdolini K, Clermont G, Mi Q, Rubinstein EN, Hebda PA, Vodovotz Y.

PLoS One. 2008 Jul 30;3(7):e2789.PMID: 18665229 [PubMed - indexed for MEDLINE]Related articlesFree article

Robust reasoning with agent-based modeling.

Bankes S, Lempert R.

Nonlinear Dynamics Psychol Life Sci. 2004 Apr;8(2):259-78.PMID: 15068738 [PubMed]Related articles

Challenges and rewards on the road to translational systems biology in acute illness: four case reports from interdisciplinary teams.

An G, Hunt CA, Clermont G, Neugebauer E, Vodovotz Y.

J Crit Care. 2007 Jun;22(2):169-75.PMID: 17548029 [PubMed - indexed for MEDLINE]Related articlesFree article

Agent-based modeling of multicell morphogenic processes during development.

Thorne BC, Bailey AM, DeSimone DW, Peirce SM.

Birth Defects Res C Embryo Today. 2007 Dec;81(4):344-53. Review.PMID: 18228259 [PubMed - indexed for MEDLINE]Related articles

A multi-level model of information seeking in the clinical domain.

Hung PW, Johnson SB, Kaufman DR, Mendonça EA.

J Biomed Inform. 2008 Apr;41(2):357-70. Epub 2007 Oct 1.PMID: 18006383 [PubMed - indexed for MEDLINE]Related articlesFree article

Multi-cell agent-based simulation of the microvasculature to study the dynamics of circulating inflammatory cell trafficking.

Bailey AM, Thorne BC, Peirce SM.

Ann Biomed Eng. 2007 Jun;35(6):916-36. Epub 2007 Apr 10.PMID: 17436112 [PubMed - indexed for MEDLINE]Related articles

In silico models of acute inflammation in animals.

Vodovotz Y, Chow CC, Bartels J, Lagoa C, Prince JM, Levy RM, Kumar R, Day J, Rubin J, Constantine G, Billiar TR, Fink MP, Clermont G.

Shock. 2006 Sep;26(3):235-44. Review.PMID: 16912648 [PubMed - indexed for MEDLINE]Related articles