PubMed

FASH: A web application for nucleotides sequence search.

Veksler-Lublinksy I, Barash D, Avisar C, Troim E, Chew P, Kedem K.

Source Code Biol Med. 2008 May 27;3:9.PMID: 18505581 [PubMed - in process]Free PMC ArticleFree textRelated citations

BOV--a web-based BLAST output visualization tool.

Gollapudi R, Revanna KV, Hemmerich C, Schaack S, Dong Q.

BMC Genomics. 2008 Sep 15;9:414.PMID: 18793422 [PubMed - indexed for MEDLINE]Free PMC ArticleFree textRelated citations

Direct mapping and alignment of protein sequences onto genomic sequence.

Gotoh O.

Bioinformatics. 2008 Nov 1;24(21):2438-44. Epub 2008 Aug 26.PMID: 18728043 [PubMed - indexed for MEDLINE]Free ArticleRelated citations

CENTROIDFOLD: a web server for RNA secondary structure prediction.

Sato K, Hamada M, Asai K, Mituyama T.

Nucleic Acids Res. 2009 Jul 1;37(Web Server issue):W277-80. Epub 2009 May 12.PMID: 19435882 [PubMed - indexed for MEDLINE]Free PMC ArticleFree textRelated citations

Web 3DNA--a web server for the analysis, reconstruction, and visualization of three-dimensional nucleic-acid structures.

Zheng G, Lu XJ, Olson WK.

Nucleic Acids Res. 2009 Jul 1;37(Web Server issue):W240-6. Epub 2009 May 27.PMID: 19474339 [PubMed - indexed for MEDLINE]Free PMC ArticleFree textRelated citations

WebGMAP: a web service for mapping and aligning cDNA sequences to genomes.

Liang C, Liu L, Ji G.

Nucleic Acids Res. 2009 Jul 1;37(Web Server issue):W77-83. Epub 2009 May 22.PMID: 19465381 [PubMed - indexed for MEDLINE]Free PMC ArticleFree textRelated citations

iMapper: a web application for the automated analysis and mapping of insertional mutagenesis sequence data against Ensembl genomes.

Kong J, Zhu F, Stalker J, Adams DJ.

Bioinformatics. 2008 Dec 15;24(24):2923-5. Epub 2008 Oct 30.PMID: 18974167 [PubMed - indexed for MEDLINE]Free PMC ArticleFree textRelated citations

Database indexing for production MegaBLAST searches.

Morgulis A, Coulouris G, Raytselis Y, Madden TL, Agarwala R, Schäffer AA.

Bioinformatics. 2008 Aug 15;24(16):1757-64. Epub 2008 Jun 21. Erratum in: Bioinformatics. 2008 Dec 15;24(24):2942. PMID: 18567917 [PubMed - indexed for MEDLINE]Free PMC ArticleFree textRelated citations

HorA web server to infer homology between proteins using sequence and structural similarity.

Kim BH, Cheng H, Grishin NV.

Nucleic Acids Res. 2009 Jul 1;37(Web Server issue):W532-8. Epub 2009 May 5.PMID: 19417074 [PubMed - indexed for MEDLINE]Free PMC ArticleFree textRelated citations

FASTR3D: a fast and accurate search tool for similar RNA 3D structures.

Lai CE, Tsai MY, Liu YC, Wang CW, Chen KT, Lu CL.

Nucleic Acids Res. 2009 Jul 1;37(Web Server issue):W287-95. Epub 2009 May 12.PMID: 19435878 [PubMed - indexed for MEDLINE]Free PMC ArticleFree textRelated citations

CID-miRNA: a web server for prediction of novel miRNA precursors in human genome.

Tyagi S, Vaz C, Gupta V, Bhatia R, Maheshwari S, Srinivasan A, Bhattacharya A.

Biochem Biophys Res Commun. 2008 Aug 8;372(4):831-4. Epub 2008 Jun 2.PMID: 18522801 [PubMed - indexed for MEDLINE]Related citations

Database similarity searches.

Plewniak F.

Methods Mol Biol. 2008;484:361-78.PMID: 18592192 [PubMed - indexed for MEDLINE]Related citations

MolLoc: a web tool for the local structural alignment of molecular surfaces.

Angaran S, Bock ME, Garutti C, Guerra C.

Nucleic Acids Res. 2009 Jul 1;37(Web Server issue):W565-70. Epub 2009 May 22.PMID: 19465382 [PubMed - indexed for MEDLINE]Free PMC ArticleFree textRelated citations

WebScipio: an online tool for the determination of gene structures using protein sequences.

Odronitz F, Pillmann H, Keller O, Waack S, Kollmar M.

BMC Genomics. 2008 Sep 18;9:422.PMID: 18801164 [PubMed - indexed for MEDLINE]Free PMC ArticleFree textRelated citations

GarlicESTdb: an online database and mining tool for garlic EST sequences.

Kim DW, Jung TS, Nam SH, Kwon HR, Kim A, Chae SH, Choi SH, Kim DW, Kim RN, Park HS.

BMC Plant Biol. 2009 May 18;9:61.PMID: 19445732 [PubMed - indexed for MEDLINE]Free PMC ArticleFree textRelated citations

OrthoSelect: a web server for selecting orthologous gene alignments from EST sequences.

Schreiber F, Wörheide G, Morgenstern B.

Nucleic Acids Res. 2009 Jul 1;37(Web Server issue):W185-8. Epub 2009 Jun 2.PMID: 19491309 [PubMed - indexed for MEDLINE]Free PMC ArticleFree textRelated citations

UniPrime2: a web service providing easier Universal Primer design.

Boutros R, Stokes N, Bekaert M, Teeling EC.

Nucleic Acids Res. 2009 Jul 1;37(Web Server issue):W209-13. Epub 2009 Apr 28.PMID: 19401435 [PubMed - indexed for MEDLINE]Free PMC ArticleFree textRelated citations

GEM-TREND: a web tool for gene expression data mining toward relevant network discovery.

Feng C, Araki M, Kunimoto R, Tamon A, Makiguchi H, Niijima S, Tsujimoto G, Okuno Y.

BMC Genomics. 2009 Sep 3;10:411.PMID: 19728865 [PubMed - indexed for MEDLINE]Free PMC ArticleFree textRelated citations

Gene orthology assessment with OrthologID.

Egan M, Lee EK, Chiu JC, Coruzzi G, Desalle R.

Methods Mol Biol. 2009;537:23-38.PMID: 19378138 [PubMed - indexed for MEDLINE]Related citations

TORQUE: topology-free querying of protein interaction networks.

Bruckner S, Hüffner F, Karp RM, Shamir R, Sharan R.

Nucleic Acids Res. 2009 Jul 1;37(Web Server issue):W106-8. Epub 2009 Jun 2.PMID: 19491310 [PubMed - indexed for MEDLINE]Free PMC ArticleFree textRelated citations