PubMed

DIALIGN-TX: greedy and progressive approaches for segment-based multiple sequence alignment.

Subramanian AR, Kaufmann M, Morgenstern B.

Algorithms Mol Biol. 2008 May 27;3:6.PMID: 18505568 [PubMed]Related articlesFree article

DIALIGN-T: an improved algorithm for segment-based multiple sequence alignment.

Subramanian AR, Weyer-Menkhoff J, Kaufmann M, Morgenstern B.

BMC Bioinformatics. 2005 Mar 22;6:66.PMID: 15784139 [PubMed - indexed for MEDLINE]Related articlesFree article

Mind the gaps: evidence of bias in estimates of multiple sequence alignments.

Golubchik T, Wise MJ, Easteal S, Jermiin LS.

Mol Biol Evol. 2007 Nov;24(11):2433-42. Epub 2007 Aug 20.PMID: 17709332 [PubMed - indexed for MEDLINE]Related articlesFree article

DIALIGN: finding local similarities by multiple sequence alignment.

Morgenstern B, Frech K, Dress A, Werner T.

Bioinformatics. 1998;14(3):290-4.PMID: 9614273 [PubMed - indexed for MEDLINE]Related articlesFree article

Grammar-based distance in progressive multiple sequence alignment.

Russell DJ, Otu HH, Sayood K.

BMC Bioinformatics. 2008 Jul 10;9:306.PMID: 18616828 [PubMed - indexed for MEDLINE]Related articlesFree article

Improvement in the accuracy of multiple sequence alignment program MAFFT.

Katoh K, Kuma K, Miyata T, Toh H.

Genome Inform. 2005;16(1):22-33.PMID: 16362903 [PubMed - indexed for MEDLINE]Related articles

DIALIGN 2: improvement of the segment-to-segment approach to multiple sequence alignment.

Morgenstern B.

Bioinformatics. 1999 Mar;15(3):211-8.PMID: 10222408 [PubMed - indexed for MEDLINE]Related articlesFree article

A min-cut Algorithm for the Consistency Problem in Multiple Sequence Alignment.

Corel E, Pitschi F, Morgenstern B.

Bioinformatics. 2010 Feb 25. [Epub ahead of print]PMID: 20189940 [PubMed - as supplied by publisher]Related articles

Genomic multiple sequence alignments: refinement using a genetic algorithm.

Wang C, Lefkowitz EJ.

BMC Bioinformatics. 2005 Aug 8;6:200.PMID: 16086841 [PubMed - indexed for MEDLINE]Related articlesFree article

MANGO: a new approach to multiple sequence alignment.

Zhang Z, Lin H, Li M.

Comput Syst Bioinformatics Conf. 2007;6:237-47.PMID: 17951828 [PubMed - indexed for MEDLINE]Related articlesFree article

Improvement in accuracy of multiple sequence alignment using novel group-to-group sequence alignment algorithm with piecewise linear gap cost.

Yamada S, Gotoh O, Yamana H.

BMC Bioinformatics. 2006 Dec 1;7:524.PMID: 17137519 [PubMed - indexed for MEDLINE]Related articlesFree article

DIALIGN P: fast pair-wise and multiple sequence alignment using parallel processors.

Schmollinger M, Nieselt K, Kaufmann M, Morgenstern B.

BMC Bioinformatics. 2004 Sep 9;5:128.PMID: 15357879 [PubMed - indexed for MEDLINE]Related articlesFree article

Align-m--a new algorithm for multiple alignment of highly divergent sequences.

Van Walle I, Lasters I, Wyns L.

Bioinformatics. 2004 Jun 12;20(9):1428-35. Epub 2004 Feb 12.PMID: 14962914 [PubMed - indexed for MEDLINE]Related articlesFree article

Quality assessment of multiple alignment programs.

Lassmann T, Sonnhammer EL.

FEBS Lett. 2002 Oct 2;529(1):126-30.PMID: 12354624 [PubMed - indexed for MEDLINE]Related articles

Fast and sensitive multiple alignment of large genomic sequences.

Brudno M, Chapman M, Göttgens B, Batzoglou S, Morgenstern B.

BMC Bioinformatics. 2003 Dec 23;4:66.PMID: 14693042 [PubMed - indexed for MEDLINE]Related articlesFree article

A polynomial time solvable formulation of multiple sequence alignment.

Sze SH, Lu Y, Yang Q.

J Comput Biol. 2006 Mar;13(2):309-19.PMID: 16597242 [PubMed - indexed for MEDLINE]Related articles

Multiple sequence alignment with user-defined anchor points.

Morgenstern B, Prohaska SJ, Pöhler D, Stadler PF.

Algorithms Mol Biol. 2006 Apr 19;1(1):6.PMID: 16722533 [PubMed]Related articlesFree article

The CHAOS/DIALIGN WWW server for multiple alignment of genomic sequences.

Brudno M, Steinkamp R, Morgenstern B.

Nucleic Acids Res. 2004 Jul 1;32(Web Server issue):W41-4.PMID: 15215346 [PubMed - indexed for MEDLINE]Related articlesFree article

Biclustering as a method for RNA local multiple sequence alignment.

Wang S, Gutell RR, Miranker DP.

Bioinformatics. 2007 Dec 15;23(24):3289-96. Epub 2007 Oct 6.PMID: 17921494 [PubMed - indexed for MEDLINE]Related articlesFree article

Multiple sequence alignment using an exhaustive and greedy algorithm.

Wang Y, Li KB.

J Bioinform Comput Biol. 2005 Apr;3(2):243-55.PMID: 15852503 [PubMed - indexed for MEDLINE]Related articles