Warning: The NCBI web site requires JavaScript to function. more...
GeneCount: genome-wide calculation of absolute tumor DNA copy numbers from array comparative genomic hybridization data.
Lyng H, Lando M, Brøvig RS, Svendsrud DH, Johansen M, Galteland E, Brustugun OT, Meza-Zepeda LA, Myklebost O, Kristensen GB, Hovig E, Stokke T.
Genome Biol. 2008;9(5):R86. Epub 2008 May 23.
Related citations
Challenges in array comparative genomic hybridization for the analysis of cancer samples.
Nowak NJ, Miecznikowski J, Moore SR, Gaile D, Bobadilla D, Smith DD, Kernstine K, Forman SJ, Mhawech-Fauceglia P, Reid M, Stoler D, Loree T, Rigual N, Sullivan M, Weiss LM, Hicks D, Slovak ML.
Genet Med. 2007 Sep;9(9):585-95.
[Correlation of DNA copy number changes to malignancy in oral squamous cell carcinomas by comparative genomic hybridization].
Miyahara Y.
Kokubyo Gakkai Zasshi. 2000 Jun;67(2):193-200. Japanese.
The application of comparative genomic hybridization to previously karyotyped cervical cancer cell lines.
Thein A, Trková M, Fox M, Parrington J.
Cancer Genet Cytogenet. 2000 Jan 1;116(1):59-65.
DNA copy number abnormality of oral squamous cell carcinoma detected with cDNA array-based comparative genomic hybridization.
Zhou X, Jordan RC, Mok S, Birrer MJ, Wong DT.
Cancer Genet Cytogenet. 2004 May;151(1):90-2. No abstract available.
Detection of DNA copy number alterations in cancer by array comparative genomic hybridization.
Michels E, De Preter K, Van Roy N, Speleman F.
Genet Med. 2007 Sep;9(9):574-84. Review.
Analyses of brain tumor cell lines confirm a simple model of relationships among fluorescence in situ hybridization, DNA index, and comparative genomic hybridization.
Mohapatra G, Moore DH, Kim DH, Grewal L, Hyun WC, Waldman FM, Pinkel D, Feuerstein BG.
Genes Chromosomes Cancer. 1997 Dec;20(4):311-9.
Estimation of tumor heterogeneity using CGH array data.
Wang K, Li J, Li S, Bolund L, Wiuf C.
BMC Bioinformatics. 2009 Jan 9;10:12.
Use of complete coverage array comparative genomic hybridization to define copy number alterations on chromosome 3p in oral squamous cell carcinomas.
Garnis C, Baldwin C, Zhang L, Rosin MP, Lam WL.
Cancer Res. 2003 Dec 15;63(24):8582-5.
Across array comparative genomic hybridization: a strategy to reduce reference channel hybridizations.
Buffart TE, Israeli D, Tijssen M, Vosse SJ, Mrsić A, Meijer GA, Ylstra B.
Genes Chromosomes Cancer. 2008 Nov;47(11):994-1004.
Integrated analysis of copy number alteration and RNA expression profiles of cancer using a high-resolution whole-genome oligonucleotide array.
Jung SH, Shin SH, Yim SH, Choi HS, Lee SH, Chung YJ.
Exp Mol Med. 2009 Jul 31;41(7):462-70.
Amplifying small amounts of tumor DNA allows detection of DNA copy number abberations with array-CGH.
Prestegarden L, Misra A, Ware ML, Yeh RF, Bjerkvig R, Feuerstein BG.
Biotechniques. 2008 Jun;44(7):Piii-Pvi.
Genomic imbalances in Schistosoma-associated and non-Schistosoma-associated bladder carcinoma. An array comparative genomic hybridization analysis.
Armengol G, Eissa S, Lozano JJ, Shoman S, Sumoy L, Caballín MR, Knuutila S.
Cancer Genet Cytogenet. 2007 Aug;177(1):16-9.
High frequency of common DNA copy number abnormalities detected by bacterial artificial chromosome array comparative genomic hybridization in 24 breast cancer cell lines.
Saito S, Morita K, Hirano T.
Hum Cell. 2009 Feb;22(1):1-10.
Defining ploidy-specific thresholds in array comparative genomic hybridization to improve the sensitivity of detection of single copy alterations in cell lines.
Ng G, Huang J, Roberts I, Coleman N.
J Mol Diagn. 2006 Sep;8(4):449-58.
Fast detection of MYCN copy number alterations in brain neuronal tumors by real-time PCR.
Malakho SG, Korshunov A, Stroganova AM, Poltaraus AB.
J Clin Lab Anal. 2008;22(2):123-30.
Relation of DNA ploidy to genetic aberrations detected by chromosomal CGH and FISH in gastric adenocarcinomas.
Furuya T, Uchiyama T, Adachi A, Chochi Y, Oga A, Kawauchi S, Ishiglo K, Sasaki K.
Oncol Rep. 2006 Jun;15(6):1491-6.
Detecting copy number variation in the human genome using comparative genomic hybridization.
Tchinda J, Lee C.
Biotechniques. 2006 Oct;41(4):385, 387, 389 passim.
Genome-wide allelic state analysis on flow-sorted tumor fractions provides an accurate measure of chromosomal aberrations.
Corver WE, Middeldorp A, ter Haar NT, Jordanova ES, van Puijenbroek M, van Eijk R, Cornelisse CJ, Fleuren GJ, Morreau H, Oosting J, van Wezel T.
Cancer Res. 2008 Dec 15;68(24):10333-40.
Chromosomal aberrations in head and neck squamous cell carcinomas in Norwegian and Sudanese populations by array comparative genomic hybridization.
Roman E, Meza-Zepeda LA, Kresse SH, Myklebost O, Vasstrand EN, Ibrahim SO.
Oncol Rep. 2008 Oct;20(4):825-43.
Filter your results:
Your browsing activity is empty.
Activity recording is turned off.
Turn recording back on