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Compressing DNA sequence databases with coil.

White WT, Hendy MD.

BMC Bioinformatics. 2008 May 20;9:242.PMID: 18489794 [PubMed - indexed for MEDLINE]Related articlesFree article

TaxMan: a taxonomic database manager.

Jones M, Blaxter M.

BMC Bioinformatics. 2006 Dec 18;7:536.PMID: 17176465 [PubMed - indexed for MEDLINE]Related articlesFree article

RED: the analysis, management and dissemination of expressed sequence tags.

Everitt R, Minnema SE, Wride MA, Koster CS, Hance JE, Mansergh FC, Rancourt DE.

Bioinformatics. 2002 Dec;18(12):1692-3.PMID: 12490458 [PubMed - indexed for MEDLINE]Related articlesFree article

RNACompress: Grammar-based compression and informational complexity measurement of RNA secondary structure.

Liu Q, Yang Y, Chen C, Bu J, Zhang Y, Ye X.

BMC Bioinformatics. 2008 Mar 31;9:176.PMID: 18373878 [PubMed - indexed for MEDLINE]Related articlesFree article

DNA sequence compression using the burrows-wheeler transform.

Adjeroh D, Zhang Y, Mukherjee A, Powell M, Bell T.

Proc IEEE Comput Soc Bioinform Conf. 2002;1:303-13.PMID: 15838146 [PubMed - indexed for MEDLINE]Related articles

MAGIC-SPP: a database-driven DNA sequence processing package with associated management tools.

Liang C, Sun F, Wang H, Qu J, Freeman RM Jr, Pratt LH, Cordonnier-Pratt MM.

BMC Bioinformatics. 2006 Mar 7;7:115.PMID: 16522212 [PubMed - indexed for MEDLINE]Related articlesFree article

A compression mechanism for sequence databases to improve the efficiency of conventional tools.

Doelz R, Eggenberger F.

Comput Appl Biosci. 1995 Apr;11(2):219-23.PMID: 7620996 [PubMed - indexed for MEDLINE]Related articles

DNACompress: fast and effective DNA sequence compression.

Chen X, Li M, Ma B, Tromp J.

Bioinformatics. 2002 Dec;18(12):1696-8.PMID: 12490460 [PubMed - indexed for MEDLINE]Related articlesFree article

annot8r: GO, EC and KEGG annotation of EST datasets.

Schmid R, Blaxter ML.

BMC Bioinformatics. 2008 Apr 9;9:180.PMID: 18400082 [PubMed - indexed for MEDLINE]Related articlesFree article

Comparing compressed sequences for faster nucleotide BLAST searches.

Cameron M, Williams HE.

IEEE/ACM Trans Comput Biol Bioinform. 2007 Jul-Sep;4(3):349-64.PMID: 17666756 [PubMed - indexed for MEDLINE]Related articles

Compression of annotated nucleotide sequences.

Korodi G, Tabus I.

IEEE/ACM Trans Comput Biol Bioinform. 2007 Jul-Sep;4(3):447-57.PMID: 17666764 [PubMed - indexed for MEDLINE]Related articles

Data structures and compression algorithms for genomic sequence data.

Brandon MC, Wallace DC, Baldi P.

Bioinformatics. 2009 Jul 15;25(14):1731-8. Epub 2009 May 15.PMID: 19447783 [PubMed - indexed for MEDLINE]Related articles

The Diatom EST Database.

Maheswari U, Montsant A, Goll J, Krishnasamy S, Rajyashri KR, Patell VM, Bowler C.

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In silico analysis of expressed sequence tags from Trichostrongylus vitrinus (Nematoda): comparison of the automated ESTExplorer workflow platform with conventional database searches.

Nagaraj SH, Gasser RB, Nisbet AJ, Ranganathan S.

BMC Bioinformatics. 2008;9 Suppl 1:S10.PMID: 18315841 [PubMed - indexed for MEDLINE]Related articlesFree article

Biological sequence compression algorithms.

Matsumoto T, Sadakane K, Imai H.

Genome Inform Ser Workshop Genome Inform. 2000;11:43-52.PMID: 11700586 [PubMed - indexed for MEDLINE]Related articlesFree article

Compression of protein sequence databases.

Strelets VB, Lim HA.

Comput Appl Biosci. 1995 Oct;11(5):557-61.PMID: 8590180 [PubMed - indexed for MEDLINE]Related articles

Large-scale identification of polymorphic microsatellites using an in silico approach.

Tang J, Baldwin SJ, Jacobs JM, Linden CG, Voorrips RE, Leunissen JA, van Eck H, Vosman B.

BMC Bioinformatics. 2008 Sep 15;9:374.PMID: 18793407 [PubMed - indexed for MEDLINE]Related articlesFree article

New method for yeast identification using Burrows-Wheeler transform.

Pokrzywa R.

J Bioinform Comput Biol. 2008 Apr;6(2):403-13.PMID: 18464330 [PubMed - indexed for MEDLINE]Related articles

ZTR: a new format for DNA sequence trace data.

Bonfield JK, Staden R.

Bioinformatics. 2002 Jan;18(1):3-10.PMID: 11836205 [PubMed - indexed for MEDLINE]Related articlesFree article

GenBank.

Benson DA, Karsch-Mizrachi I, Lipman DJ, Ostell J, Wheeler DL.

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