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    Results: 1 to 20 of 125

    1.

    Aspects of coverage in medical DNA sequencing.

    Wendl MC, Wilson RK.

    BMC Bioinformatics. 2008 May 16;9:239.PMID: 18485222 [PubMed - indexed for MEDLINE]Related articlesFree article

    2.

    A general coverage theory for shotgun DNA sequencing.

    Wendl MC.

    J Comput Biol. 2006 Jul-Aug;13(6):1177-96.PMID: 16901236 [PubMed - indexed for MEDLINE]Related articles

    3.

    Extension of Lander-Waterman theory for sequencing filtered DNA libraries.

    Wendl MC, Barbazuk WB.

    BMC Bioinformatics. 2005 Oct 10;6:245.PMID: 16216129 [PubMed - indexed for MEDLINE]Related articlesFree article

    4.

    Whole-genome sequencing and variant discovery in C. elegans.

    Hillier LW, Marth GT, Quinlan AR, Dooling D, Fewell G, Barnett D, Fox P, Glasscock JI, Hickenbotham M, Huang W, Magrini VJ, Richt RJ, Sander SN, Stewart DA, Stromberg M, Tsung EF, Wylie T, Schedl T, Wilson RK, Mardis ER.

    Nat Methods. 2008 Feb;5(2):183-8. Epub 2008 Jan 20.PMID: 18204455 [PubMed - indexed for MEDLINE]Related articles

    5.

    Assessing the feasibility of GS FLX Pyrosequencing for sequencing the Atlantic salmon genome.

    Quinn NL, Levenkova N, Chow W, Bouffard P, Boroevich KA, Knight JR, Jarvie TP, Lubieniecki KP, Desany BA, Koop BF, Harkins TT, Davidson WS.

    BMC Genomics. 2008 Aug 28;9:404.PMID: 18755037 [PubMed - indexed for MEDLINE]Related articlesFree article

    6.

    Occupancy modeling of coverage distribution for whole genome shotgun DNA sequencing.

    Wendl MC.

    Bull Math Biol. 2006 Jan;68(1):179-96. Epub 2006 Mar 24.PMID: 16794926 [PubMed - indexed for MEDLINE]Related articles

    7.

    Sequence and structural variation in a human genome uncovered by short-read, massively parallel ligation sequencing using two-base encoding.

    McKernan KJ, Peckham HE, Costa GL, McLaughlin SF, Fu Y, Tsung EF, Clouser CR, Duncan C, Ichikawa JK, Lee CC, Zhang Z, Ranade SS, Dimalanta ET, Hyland FC, Sokolsky TD, Zhang L, Sheridan A, Fu H, Hendrickson CL, Li B, Kotler L, Stuart JR, Malek JA, Manning JM, Antipova AA, Perez DS, Moore MP, Hayashibara KC, Lyons MR, Beaudoin RE, Coleman BE, Laptewicz MW, Sannicandro AE, Rhodes MD, Gottimukkala RK, Yang S, Bafna V, Bashir A, MacBride A, Alkan C, Kidd JM, Eichler EE, Reese MG, De La Vega FM, Blanchard AP.

    Genome Res. 2009 Sep;19(9):1527-41. Epub 2009 Jun 22.PMID: 19546169 [PubMed - indexed for MEDLINE]Related articlesFree article

    8.

    Multiplex padlock targeted sequencing reveals human hypermutable CpG variations.

    Li JB, Gao Y, Aach J, Zhang K, Kryukov GV, Xie B, Ahlford A, Yoon JK, Rosenbaum AM, Zaranek AW, LeProust E, Sunyaev SR, Church GM.

    Genome Res. 2009 Sep;19(9):1606-15. Epub 2009 Jun 12.PMID: 19525355 [PubMed - indexed for MEDLINE]Related articles

    9.

    Comparing platforms for C. elegans mutant identification using high-throughput whole-genome sequencing.

    Shen Y, Sarin S, Liu Y, Hobert O, Pe'er I.

    PLoS One. 2008;3(12):e4012. Epub 2008 Dec 24.PMID: 19107202 [PubMed - indexed for MEDLINE]Related articlesFree article

    10.

    A Bayesian nonparametric method for prediction in EST analysis.

    Lijoi A, Mena RH, Prünster I.

    BMC Bioinformatics. 2007 Sep 14;8:339.PMID: 17868445 [PubMed - indexed for MEDLINE]Related articlesFree article

    11.

    Preparing a re-sequencing DNA library of 2 cancer candidate genes using the ligation-by-amplification protocol by two PCR reactions.

    Su Y, Lin L, Tian G, Chen C, Liu T, Xu X, Qi X, Zhang X, Yang H.

    Sci China C Life Sci. 2009 May;52(5):483-91. Epub 2009 May 27.PMID: 19471873 [PubMed - indexed for MEDLINE]Related articles

    12.

    Experimental analysis of oligonucleotide microarray design criteria to detect deletions by comparative genomic hybridization.

    Flibotte S, Moerman DG.

    BMC Genomics. 2008 Oct 21;9:497.PMID: 18940006 [PubMed - indexed for MEDLINE]Related articlesFree article

    13.

    How the worm was won. The C. elegans genome sequencing project.

    Wilson RK.

    Trends Genet. 1999 Feb;15(2):51-8.PMID: 10098407 [PubMed - indexed for MEDLINE]Related articles

    14.

    Analysis of sequence-tagged-connector strategies for DNA sequencing.

    Siegel AF, Trask B, Roach JC, Mahairas GG, Hood L, van den Engh G.

    Genome Res. 1999 Mar;9(3):297-307.PMID: 10077536 [PubMed - indexed for MEDLINE]Related articlesFree article

    15.

    Genome-wide massively parallel sequencing of formaldehyde fixed-paraffin embedded (FFPE) tumor tissues for copy-number- and mutation-analysis.

    Schweiger MR, Kerick M, Timmermann B, Albrecht MW, Borodina T, Parkhomchuk D, Zatloukal K, Lehrach H.

    PLoS One. 2009;4(5):e5548. Epub 2009 May 14.PMID: 19440246 [PubMed - indexed for MEDLINE]Related articlesFree article

    16.

    Pairwise end sequencing: a unified approach to genomic mapping and sequencing.

    Roach JC, Boysen C, Wang K, Hood L.

    Genomics. 1995 Mar 20;26(2):345-53.PMID: 7601461 [PubMed - indexed for MEDLINE]Related articles

    17.

    The Genome Sequencer FLX System--longer reads, more applications, straight forward bioinformatics and more complete data sets.

    Droege M, Hill B.

    J Biotechnol. 2008 Aug 31;136(1-2):3-10. Epub 2008 Jun 21. Review.PMID: 18616967 [PubMed - indexed for MEDLINE]Related articles

    18.

    Transcriptome analysis for Caenorhabditis elegans based on novel expressed sequence tags.

    Shin H, Hirst M, Bainbridge MN, Magrini V, Mardis E, Moerman DG, Marra MA, Baillie DL, Jones SJ.

    BMC Biol. 2008 Jul 8;6:30.PMID: 18611272 [PubMed - indexed for MEDLINE]Related articlesFree article

    19.

    SNP detection for massively parallel whole-genome resequencing.

    Li R, Li Y, Fang X, Yang H, Wang J, Kristiansen K, Wang J.

    Genome Res. 2009 Jun;19(6):1124-32. Epub 2009 May 6.PMID: 19420381 [PubMed - indexed for MEDLINE]Related articlesFree article

    20.

    Statistical aspects of discerning indel-type structural variation via DNA sequence alignment.

    Wendl MC, Wilson RK.

    BMC Genomics. 2009 Aug 5;10:359.PMID: 19656394 [PubMed - indexed for MEDLINE]Related articlesFree article

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