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    Results: 1 to 20 of 272

    1.

    Context-specific metabolic networks are consistent with experiments.

    Becker SA, Palsson BO.

    PLoS Comput Biol. 2008 May 16;4(5):e1000082.PMID: 18483554 [PubMed - indexed for MEDLINE]Related articlesFree article

    2.

    Constructing gene co-expression networks and predicting functions of unknown genes by random matrix theory.

    Luo F, Yang Y, Zhong J, Gao H, Khan L, Thompson DK, Zhou J.

    BMC Bioinformatics. 2007 Aug 14;8:299.PMID: 17697349 [PubMed - indexed for MEDLINE]Related articlesFree article

    3.

    Reconstruction of metabolic networks from high-throughput metabolite profiling data: in silico analysis of red blood cell metabolism.

    Nemenman I, Escola GS, Hlavacek WS, Unkefer PJ, Unkefer CJ, Wall ME.

    Ann N Y Acad Sci. 2007 Dec;1115:102-15. Epub 2007 Oct 9.PMID: 17925356 [PubMed - indexed for MEDLINE]Related articles

    4.

    Alternative pathway approach for automating analysis and validation of cell perturbation networks and design of perturbation experiments.

    Gong Y, Zhang Z.

    Ann N Y Acad Sci. 2007 Dec;1115:267-85. Epub 2007 Oct 9.PMID: 17925355 [PubMed - indexed for MEDLINE]Related articles

    5.

    A blocking strategy to improve gene selection for classification of gene expression data.

    Bontempi G.

    IEEE/ACM Trans Comput Biol Bioinform. 2007 Apr-Jun;4(2):293-300.PMID: 17473321 [PubMed - indexed for MEDLINE]Related articles

    6.

    Rank-based edge reconstruction for scale-free genetic regulatory networks.

    Chen G, Larsen P, Almasri E, Dai Y.

    BMC Bioinformatics. 2008 Jan 31;9:75.PMID: 18237422 [PubMed - indexed for MEDLINE]Related articlesFree article

    7.

    EDISA: extracting biclusters from multiple time-series of gene expression profiles.

    Supper J, Strauch M, Wanke D, Harter K, Zell A.

    BMC Bioinformatics. 2007 Sep 12;8:334.PMID: 17850657 [PubMed - indexed for MEDLINE]Related articlesFree article

    8.

    Learning regulatory programs that accurately predict differential expression with MEDUSA.

    Kundaje A, Lianoglou S, Li X, Quigley D, Arias M, Wiggins CH, Zhang L, Leslie C.

    Ann N Y Acad Sci. 2007 Dec;1115:178-202. Epub 2007 Oct 12.PMID: 17934055 [PubMed - indexed for MEDLINE]Related articles

    9.

    Precedence Temporal Networks to represent temporal relationships in gene expression data.

    Sacchi L, Larizza C, Magni P, Bellazzi R.

    J Biomed Inform. 2007 Dec;40(6):761-74. Epub 2007 Jun 10.PMID: 17644489 [PubMed - indexed for MEDLINE]Related articles

    10.

    Comparison of reverse-engineering methods using an in silico network.

    Camacho D, Vera Licona P, Mendes P, Laubenbacher R.

    Ann N Y Acad Sci. 2007 Dec;1115:73-89. Epub 2007 Oct 9. Review.PMID: 17925358 [PubMed - indexed for MEDLINE]Related articles

    11.

    Inference of scale-free networks from gene expression time series.

    Daisuke T, Horton P.

    J Bioinform Comput Biol. 2006 Apr;4(2):503-14.PMID: 16819798 [PubMed - indexed for MEDLINE]Related articles

    12.

    Linear matrix inequalities approach to reconstruction of biological networks.

    Cosentino C, Curatola W, Montefusco F, Bansal M, di Bernardo D, Amato F.

    IET Syst Biol. 2007 May;1(3):164-73.PMID: 17591175 [PubMed - indexed for MEDLINE]Related articles

    13.

    Increasing the power to detect causal associations by combining genotypic and expression data in segregating populations.

    Zhu J, Wiener MC, Zhang C, Fridman A, Minch E, Lum PY, Sachs JR, Schadt EE.

    PLoS Comput Biol. 2007 Apr 13;3(4):e69. Epub 2007 Feb 27.PMID: 17432931 [PubMed - indexed for MEDLINE]Related articlesFree article

    14.

    Reverse engineering of regulatory networks in human B cells.

    Basso K, Margolin AA, Stolovitzky G, Klein U, Dalla-Favera R, Califano A.

    Nat Genet. 2005 Apr;37(4):382-90. Epub 2005 Mar 20.PMID: 15778709 [PubMed - indexed for MEDLINE]Related articles

    15.

    Filling gaps in a metabolic network using expression information.

    Kharchenko P, Vitkup D, Church GM.

    Bioinformatics. 2004 Aug 4;20 Suppl 1:i178-85.PMID: 15262797 [PubMed - indexed for MEDLINE]Related articlesFree article

    16.

    anNET: a tool for network-embedded thermodynamic analysis of quantitative metabolome data.

    Zamboni N, Kümmel A, Heinemann M.

    BMC Bioinformatics. 2008 Apr 16;9:199.PMID: 18416814 [PubMed - indexed for MEDLINE]Related articlesFree article

    17.

    Reverse engineering of dynamic networks.

    Stigler B, Jarrah A, Stillman M, Laubenbacher R.

    Ann N Y Acad Sci. 2007 Dec;1115:168-77. Epub 2007 Oct 9.PMID: 17925347 [PubMed - indexed for MEDLINE]Related articles

    18.

    A phase synchronization clustering algorithm for identifying interesting groups of genes from cell cycle expression data.

    Kim CS, Bae CS, Tcha HJ.

    BMC Bioinformatics. 2008 Jan 28;9:56.PMID: 18221564 [PubMed - indexed for MEDLINE]Related articlesFree article

    19.

    Use of genome-scale microbial models for metabolic engineering.

    Patil KR, Akesson M, Nielsen J.

    Curr Opin Biotechnol. 2004 Feb;15(1):64-9. Review.PMID: 15102469 [PubMed - indexed for MEDLINE]Related articles

    20.

    Data requirements of reverse-engineering algorithms.

    Just W.

    Ann N Y Acad Sci. 2007 Dec;1115:142-53. Epub 2007 Oct 9.PMID: 17925350 [PubMed - indexed for MEDLINE]Related articles

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