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    Results: 1 to 20 of 407

    1.

    Discovery and assembly of repeat family pseudomolecules from sparse genomic sequence data using the Assisted Automated Assembler of Repeat Families (AAARF) algorithm.

    DeBarry JD, Liu R, Bennetzen JL.

    BMC Bioinformatics. 2008 May 13;9:235.PMID: 18474116 [PubMed - indexed for MEDLINE]Related articlesFree article

    2.

    Abundance, distribution, and transcriptional activity of repetitive elements in the maize genome.

    Meyers BC, Tingey SV, Morgante M.

    Genome Res. 2001 Oct;11(10):1660-76.PMID: 11591643 [PubMed - indexed for MEDLINE]Related articlesFree article

    3.

    TEnest: automated chronological annotation and visualization of nested plant transposable elements.

    Kronmiller BA, Wise RP.

    Plant Physiol. 2008 Jan;146(1):45-59. Epub 2007 Nov 21.PMID: 18032588 [PubMed - indexed for MEDLINE]Related articlesFree article

    4.

    Repetitive DNA in the pea (Pisum sativum L.) genome: comprehensive characterization using 454 sequencing and comparison to soybean and Medicago truncatula.

    Macas J, Neumann P, Navrátilová A.

    BMC Genomics. 2007 Nov 21;8:427.PMID: 18031571 [PubMed - indexed for MEDLINE]Related articlesFree article

    5.

    Automated de novo identification of repeat sequence families in sequenced genomes.

    Bao Z, Eddy SR.

    Genome Res. 2002 Aug;12(8):1269-76.PMID: 12176934 [PubMed - indexed for MEDLINE]Related articlesFree article

    6.

    T2prhd: a tool to study the patterns of repeat evolution.

    Sipos B, Somogyi K, Andó I, Pénzes Z.

    BMC Bioinformatics. 2008 Jan 18;9:27.PMID: 18205906 [PubMed - indexed for MEDLINE]Related articlesFree article

    7.

    Database of Trypanosoma cruzi repeated genes: 20,000 additional gene variants.

    Arner E, Kindlund E, Nilsson D, Farzana F, Ferella M, Tammi MT, Andersson B.

    BMC Genomics. 2007 Oct 26;8:391.PMID: 17963481 [PubMed - indexed for MEDLINE]Related articlesFree article

    8.

    Enrichment of gene-coding sequences in maize by genome filtration.

    Whitelaw CA, Barbazuk WB, Pertea G, Chan AP, Cheung F, Lee Y, Zheng L, van Heeringen S, Karamycheva S, Bennetzen JL, SanMiguel P, Lakey N, Bedell J, Yuan Y, Budiman MA, Resnick A, Van Aken S, Utterback T, Riedmuller S, Williams M, Feldblyum T, Schubert K, Beachy R, Fraser CM, Quackenbush J.

    Science. 2003 Dec 19;302(5653):2118-20.PMID: 14684821 [PubMed - indexed for MEDLINE]Related articlesFree article

    9.

    Global repeat discovery and estimation of genomic copy number in a large, complex genome using a high-throughput 454 sequence survey.

    Swaminathan K, Varala K, Hudson ME.

    BMC Genomics. 2007 May 24;8:132.PMID: 17524145 [PubMed - indexed for MEDLINE]Related articlesFree article

    10.

    Transposable element annotation of the rice genome.

    Juretic N, Bureau TE, Bruskiewich RM.

    Bioinformatics. 2004 Jan 22;20(2):155-60.PMID: 14734305 [PubMed - indexed for MEDLINE]Related articlesFree article

    11.

    Rice pseudomolecule-anchored cross-species DNA sequence alignments indicate regional genomic variation in expressed sequence conservation.

    Armstead I, Huang L, King J, Ougham H, Thomas H, King I.

    BMC Genomics. 2007 Aug 20;8:283.PMID: 17708759 [PubMed - indexed for MEDLINE]Related articlesFree article

    12.

    Low-pass shotgun sequencing of the barley genome facilitates rapid identification of genes, conserved non-coding sequences and novel repeats.

    Wicker T, Narechania A, Sabot F, Stein J, Vu GT, Graner A, Ware D, Stein N.

    BMC Genomics. 2008 Oct 31;9:518.PMID: 18976483 [PubMed - indexed for MEDLINE]Related articlesFree article

    13.

    A random sequencing approach for the analysis of the Trypanosoma cruzi genome: general structure, large gene and repetitive DNA families, and gene discovery.

    Agüero F, Verdún RE, Frasch AC, Sánchez DO.

    Genome Res. 2000 Dec;10(12):1996-2005.PMID: 11116094 [PubMed - indexed for MEDLINE]Related articlesFree article

    14.

    ReRep: computational detection of repetitive sequences in genome survey sequences (GSS).

    Otto TD, Gomes LH, Alves-Ferreira M, de Miranda AB, Degrave WM.

    BMC Bioinformatics. 2008 Sep 9;9:366.PMID: 18782453 [PubMed - indexed for MEDLINE]Related articlesFree article

    15.

    The maize genome as a model for efficient sequence analysis of large plant genomes.

    Rabinowicz PD, Bennetzen JL.

    Curr Opin Plant Biol. 2006 Apr;9(2):149-56. Epub 2006 Feb 3. Review.PMID: 16459129 [PubMed - indexed for MEDLINE]Related articles

    16.

    MITE display.

    Casa AM, Nagel A, Wessler SR.

    Methods Mol Biol. 2004;260:175-88.PMID: 15020809 [PubMed - indexed for MEDLINE]Related articles

    17.

    Structure and evolution of the Cinful retrotransposon family of maize.

    Sanz-Alferez S, SanMiguel P, Jin YK, Springer PS, Bennetzen JL.

    Genome. 2003 Oct;46(5):745-52.PMID: 14608391 [PubMed - indexed for MEDLINE]Related articles

    18.

    Evolutionary rates and patterns for human transcription factor binding sites derived from repetitive DNA.

    Polavarapu N, Mariño-Ramírez L, Landsman D, McDonald JF, Jordan IK.

    BMC Genomics. 2008 May 17;9:226.PMID: 18485226 [PubMed - indexed for MEDLINE]Related articlesFree article

    19.

    A strategy for assembling the maize (Zea mays L.) genome.

    Emrich SJ, Aluru S, Fu Y, Wen TJ, Narayanan M, Guo L, Ashlock DA, Schnable PS.

    Bioinformatics. 2004 Jan 22;20(2):140-7.PMID: 14734303 [PubMed - indexed for MEDLINE]Related articlesFree article

    20.

    Similarity of the Cin1 repetitive family of Zea mays to eukaryotic transposable elements.

    Shepherd NS, Schwarz-Sommer Z, Blumberg vel Spalve J, Gupta M, Wienand U, Saedler H.

    Nature. 1984 Jan 12-18;307(5947):185-7.PMID: 6318125 [PubMed - indexed for MEDLINE]Related articles

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