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The multiplicity problem in linkage analysis of gene expression data - the power of differentiating cis- and trans-acting regulators.

Huang B, Rangrej J, Paterson AD, Sun L.

BMC Proc. 2007;1 Suppl 1:S142. Epub 2007 Dec 18.PMID: 18466486 [PubMed]Related articlesFree article

Stratified false discovery control for large-scale hypothesis testing with application to genome-wide association studies.

Sun L, Craiu RV, Paterson AD, Bull SB.

Genet Epidemiol. 2006 Sep;30(6):519-30.PMID: 16800000 [PubMed - indexed for MEDLINE]Related articles

Power and type I error rate of false discovery rate approaches in genome-wide association studies.

Yang Q, Cui J, Chazaro I, Cupples LA, Demissie S.

BMC Genet. 2005 Dec 30;6 Suppl 1:S134. [Epub ahead of print]PMID: 16451593 [PubMed - as supplied by publisher]Related articlesFree article

Identifying cis- and trans-acting single-nucleotide polymorphisms controlling lymphocyte gene expression in humans.

Hu P, Lan H, Xu W, Beyene J, Greenwood CM.

BMC Proc. 2007;1 Suppl 1:S7. Epub 2007 Dec 18.PMID: 18466571 [PubMed]Related articlesFree article

Genome-wide association analyses of North American Rheumatoid Arthritis Consortium and Framingham Heart Study data utilizing genome-wide linkage results.

Yoo YJ, Pinnaduwage D, Waggott D, Bull SB, Sun L.

BMC Proc. 2009 Dec 15;3 Suppl 7:S103.PMID: 20017967 [PubMed - in process]Related articlesFree article

Were genome-wide linkage studies a waste of time? Exploiting candidate regions within genome-wide association studies.

Yoo YJ, Bull SB, Paterson AD, Waggott D, Sun L; The Diabetes Control and Complications Trial/Epidemiology of Diabetes Interventions and Complications Research Group.

Genet Epidemiol. 2009 Jul 22. [Epub ahead of print]PMID: 19626703 [PubMed - as supplied by publisher]Related articles

Validating discovered Cis-acting regulatory genetic variants: application of an allele specific expression approach to HapMap populations.

Campino S, Forton J, Raj S, Mohr B, Auburn S, Fry A, Mangano VD, Vandiedonck C, Richardson A, Rockett K, Clark TG, Kwiatkowski DP.

PLoS One. 2008;3(12):e4105. Epub 2008 Dec 31.PMID: 19116668 [PubMed - indexed for MEDLINE]Related articlesFree article

Accuracy of genome-wide imputation of untyped markers and impacts on statistical power for association studies.

Hao K, Chudin E, McElwee J, Schadt EE.

BMC Genet. 2009 Jun 16;10:27.PMID: 19531258 [PubMed - indexed for MEDLINE]Related articlesFree article

Joint linkage and imprinting analyses of GAW15 rheumatoid arthritis and gene expression data.

Zhou X, Chen W, Swartz MD, Lu Y, Yu R, Amos CI, Wu CC, Shete S.

BMC Proc. 2007;1 Suppl 1:S53. Epub 2007 Dec 18.PMID: 18466553 [PubMed]Related articlesFree article

Methods for evaluating gene expression from Affymetrix microarray datasets.

Jiang N, Leach LJ, Hu X, Potokina E, Jia T, Druka A, Waugh R, Kearsey MJ, Luo ZW.

BMC Bioinformatics. 2008 Jun 17;9:284.PMID: 18559105 [PubMed - indexed for MEDLINE]Related articlesFree article

Genome-wide co-expression analysis in multiple tissues.

Grieve IC, Dickens NJ, Pravenec M, Kren V, Hubner N, Cook SA, Aitman TJ, Petretto E, Mangion J.

PLoS One. 2008;3(12):e4033. Epub 2008 Dec 29.PMID: 19112506 [PubMed - indexed for MEDLINE]Related articlesFree article

Genome-wide sparse canonical correlation of gene expression with genotypes.

Parkhomenko E, Tritchler D, Beyene J.

BMC Proc. 2007;1 Suppl 1:S119. Epub 2007 Dec 18.PMID: 18466460 [PubMed]Related articlesFree article

Comparing gene set analysis methods on single-nucleotide polymorphism data from Genetic Analysis Workshop 16.

Tintle NL, Borchers B, Brown M, Bekmetjev A.

BMC Proc. 2009 Dec 15;3 Suppl 7:S96.PMID: 20018093 [PubMed - in process]Related articlesFree article

Considering dependence among genes and markers for false discovery control in eQTL mapping.

Chen L, Tong T, Zhao H.

Bioinformatics. 2008 Sep 15;24(18):2015-22. Epub 2008 Jul 17.PMID: 18635565 [PubMed - indexed for MEDLINE]Related articlesFree article

Multiple testing in the genomics era: findings from Genetic Analysis Workshop 15, Group 15.

Martin LJ, Woo JG, Avery CL, Chen HS, North KE, Au K, Broët P, Dalmasso C, Guedj M, Holmans P, Huang B, Kuo PH, Lam AC, Li H, Manning A, Nikolov I, Sinha R, Shi J, Song K, Tabangin M, Tang R, Yamada R.

Genet Epidemiol. 2007;31 Suppl 1:S124-31. Review.PMID: 18046761 [PubMed - indexed for MEDLINE]Related articles

Filtering for increased power for microarray data analysis.

Hackstadt AJ, Hess AM.

BMC Bioinformatics. 2009 Jan 8;10:11.PMID: 19133141 [PubMed - indexed for MEDLINE]Related articlesFree article

Sex, age and generation effects on genome-wide linkage analysis of gene expression in transformed lymphoblasts.

Rangrej J, Beyene J, Hu P, Paterson AD.

BMC Proc. 2007;1 Suppl 1:S92. Epub 2007 Dec 18.PMID: 18466596 [PubMed]Related articlesFree article

Discovery properties of genome-wide association signals from cumulatively combined data sets.

Pereira TV, Patsopoulos NA, Salanti G, Ioannidis JP.

Am J Epidemiol. 2009 Nov 15;170(10):1197-206. Epub 2009 Oct 6.PMID: 19808636 [PubMed - indexed for MEDLINE]Related articles

Genetic analysis of radiation-induced changes in human gene expression.

Smirnov DA, Morley M, Shin E, Spielman RS, Cheung VG.

Nature. 2009 May 28;459(7246):587-91. Epub 2009 Apr 6.PMID: 19349959 [PubMed - indexed for MEDLINE]Related articles

A mixture model approach to multiple testing for the genetic analysis of gene expression.

Dalmasso C, Pickrell J, Tuefferd M, Génin E, Bourgain C, Broët P.

BMC Proc. 2007;1 Suppl 1:S141. Epub 2007 Dec 18.PMID: 18466485 [PubMed]Related articlesFree article