PubMed

Facilitating the development of controlled vocabularies for metabolomics technologies with text mining.

Spasić I, Schober D, Sansone SA, Rebholz-Schuhmann D, Kell DB, Paton NW.

BMC Bioinformatics. 2008 Apr 29;9 Suppl 5:S5.PMID: 18460187 [PubMed - indexed for MEDLINE]Related articlesFree article

Text mining and ontologies in biomedicine: making sense of raw text.

Spasic I, Ananiadou S, McNaught J, Kumar A.

Brief Bioinform. 2005 Sep;6(3):239-51. Review.PMID: 16212772 [PubMed - indexed for MEDLINE]Related articlesFree article

Textpresso: an ontology-based information retrieval and extraction system for biological literature.

Müller HM, Kenny EE, Sternberg PW.

PLoS Biol. 2004 Nov;2(11):e309. Epub 2004 Sep 21.PMID: 15383839 [PubMed - indexed for MEDLINE]Related articlesFree article

A survey of current work in biomedical text mining.

Cohen AM, Hersh WR.

Brief Bioinform. 2005 Mar;6(1):57-71. Review.PMID: 15826357 [PubMed - indexed for MEDLINE]Related articlesFree article

Text processing through Web services: calling Whatizit.

Rebholz-Schuhmann D, Arregui M, Gaudan S, Kirsch H, Jimeno A.

Bioinformatics. 2008 Jan 15;24(2):296-8. Epub 2007 Nov 15.PMID: 18006544 [PubMed - indexed for MEDLINE]Related articlesFree article

The next generation of literature analysis: integration of genomic analysis into text mining.

Scherf M, Epple A, Werner T.

Brief Bioinform. 2005 Sep;6(3):287-97. Review.PMID: 16212776 [PubMed - indexed for MEDLINE]Related articlesFree article

Building a protein name dictionary from full text: a machine learning term extraction approach.

Shi L, Campagne F.

BMC Bioinformatics. 2005 Apr 7;6:88.PMID: 15817129 [PubMed - indexed for MEDLINE]Related articlesFree article

Terminology-driven mining of biomedical literature.

Nenadic G, Spasic I, Ananiadou S.

Bioinformatics. 2003 May 22;19(8):938-43.PMID: 12761055 [PubMed - indexed for MEDLINE]Related articlesFree article

MaSTerClass: a case-based reasoning system for the classification of biomedical terms.

Spasic I, Ananiadou S, Tsujii J.

Bioinformatics. 2005 Jun 1;21(11):2748-58. Epub 2005 Feb 22.PMID: 15728115 [PubMed - indexed for MEDLINE]Related articlesFree article

A multi-level text mining method to extract biological relationships.

Palakal M, Stephens M, Mukhopadhyay S, Raje R, Rhodes S.

Proc IEEE Comput Soc Bioinform Conf. 2002;1:97-108.PMID: 15838127 [PubMed - indexed for MEDLINE]Related articles

Assessment of disease named entity recognition on a corpus of annotated sentences.

Jimeno A, Jimenez-Ruiz E, Lee V, Gaudan S, Berlanga R, Rebholz-Schuhmann D.

BMC Bioinformatics. 2008 Apr 11;9 Suppl 3:S3.PMID: 18426548 [PubMed - indexed for MEDLINE]Related articlesFree article

Discovering patterns to extract protein-protein interactions from the literature: Part II.

Hao Y, Zhu X, Huang M, Li M.

Bioinformatics. 2005 Aug 1;21(15):3294-300. Epub 2005 May 12.PMID: 15890744 [PubMed - indexed for MEDLINE]Related articlesFree article

MedKit: a helper toolkit for automatic mining of MEDLINE/PubMed citations.

Ding J, Berleant D.

Bioinformatics. 2005 Mar 1;21(5):694-5. Epub 2004 Oct 27.PMID: 15509599 [PubMed - indexed for MEDLINE]Related articlesFree article

Automatic recognition of topic-classified relations between prostate cancer and genes using MEDLINE abstracts.

Chun HW, Tsuruoka Y, Kim JD, Shiba R, Nagata N, Hishiki T, Tsujii J.

BMC Bioinformatics. 2006 Nov 24;7 Suppl 3:S4.PMID: 17134477 [PubMed - indexed for MEDLINE]Related articlesFree article

FigSearch: a figure legend indexing and classification system.

Liu F, Jenssen TK, Nygaard V, Sack J, Hovig E.

Bioinformatics. 2004 Nov 1;20(16):2880-2. Epub 2004 May 14.PMID: 15145804 [PubMed - indexed for MEDLINE]Related articlesFree article

A quantitative model for linking two disparate sets of articles in MEDLINE.

Torvik VI, Smalheiser NR.

Bioinformatics. 2007 Jul 1;23(13):1658-65. Epub 2007 Apr 26.PMID: 17463015 [PubMed - indexed for MEDLINE]Related articlesFree article

Information content in Medline record fields.

Kostoff RN, Block JA, Stump JA, Pfeil KM.

Int J Med Inform. 2004 Jun 30;73(6):515-27.PMID: 15171980 [PubMed - indexed for MEDLINE]Related articles

Identification of key concepts in biomedical literature using a modified Markov heuristic.

Majoros WH, Subramanian GM, Yandell MD.

Bioinformatics. 2003 Feb 12;19(3):402-7.PMID: 12584127 [PubMed - indexed for MEDLINE]Related articlesFree article

Distributed modules for text annotation and IE applied to the biomedical domain.

Kirsch H, Gaudan S, Rebholz-Schuhmann D.

Int J Med Inform. 2006 Jun;75(6):496-500. Epub 2005 Aug 8.PMID: 16085453 [PubMed - indexed for MEDLINE]Related articles

An entity tagger for recognizing acquired genomic variations in cancer literature.

McDonald RT, Winters RS, Mandel M, Jin Y, White PS, Pereira F.

Bioinformatics. 2004 Nov 22;20(17):3249-51. Epub 2004 Jun 4.PMID: 15180929 [PubMed - indexed for MEDLINE]Related articlesFree article