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Terminologies for text-mining; an experiment in the lipoprotein metabolism domain.

Alexopoulou D, Wächter T, Pickersgill L, Eyre C, Schroeder M.

BMC Bioinformatics. 2008 Apr 25;9 Suppl 4:S2.PMID: 18460175 [PubMed - indexed for MEDLINE]Related articlesFree article

Assessment of disease named entity recognition on a corpus of annotated sentences.

Jimeno A, Jimenez-Ruiz E, Lee V, Gaudan S, Berlanga R, Rebholz-Schuhmann D.

BMC Bioinformatics. 2008 Apr 11;9 Suppl 3:S3.PMID: 18426548 [PubMed - indexed for MEDLINE]Related articlesFree article

Terminology-driven mining of biomedical literature.

Nenadic G, Spasic I, Ananiadou S.

Bioinformatics. 2003 May 22;19(8):938-43.PMID: 12761055 [PubMed - indexed for MEDLINE]Related articlesFree article

Text mining and ontologies in biomedicine: making sense of raw text.

Spasic I, Ananiadou S, McNaught J, Kumar A.

Brief Bioinform. 2005 Sep;6(3):239-51. Review.PMID: 16212772 [PubMed - indexed for MEDLINE]Related articlesFree article

OntologyWidget - a reusable, embeddable widget for easily locating ontology terms.

Beauheim CC, Wymore F, Nitzberg M, Zachariah ZK, Jin H, Skene JH, Ball CA, Sherlock G.

BMC Bioinformatics. 2007 Sep 13;8:338.PMID: 17854506 [PubMed - indexed for MEDLINE]Related articlesFree article

SEMEDA: ontology based semantic integration of biological databases.

Köhler J, Philippi S, Lange M.

Bioinformatics. 2003 Dec 12;19(18):2420-7.PMID: 14668226 [PubMed - indexed for MEDLINE]Related articlesFree article

Ontology-guided data preparation for discovering genotype-phenotype relationships.

Coulet A, Smaïl-Tabbone M, Benlian P, Napoli A, Devignes MD.

BMC Bioinformatics. 2008 Apr 25;9 Suppl 4:S3.PMID: 18460176 [PubMed - indexed for MEDLINE]Related articlesFree article

RDFScape: Semantic Web meets systems biology.

Splendiani A.

BMC Bioinformatics. 2008 Apr 25;9 Suppl 4:S6.PMID: 18460179 [PubMed - indexed for MEDLINE]Related articlesFree article

Facilitating the development of controlled vocabularies for metabolomics technologies with text mining.

Spasić I, Schober D, Sansone SA, Rebholz-Schuhmann D, Kell DB, Paton NW.

BMC Bioinformatics. 2008 Apr 29;9 Suppl 5:S5.PMID: 18460187 [PubMed - indexed for MEDLINE]Related articlesFree article

The Ontology Lookup Service, a lightweight cross-platform tool for controlled vocabulary queries.

Côté RG, Jones P, Apweiler R, Hermjakob H.

BMC Bioinformatics. 2006 Feb 28;7:97.PMID: 16507094 [PubMed - indexed for MEDLINE]Related articlesFree article

An environment for relation mining over richly annotated corpora: the case of GENIA.

Rinaldi F, Schneider G, Kaljurand K, Hess M, Romacker M.

BMC Bioinformatics. 2006 Nov 24;7 Suppl 3:S3.PMID: 17134476 [PubMed - indexed for MEDLINE]Related articlesFree article

New challenges for text mining: mapping between text and manually curated pathways.

Oda K, Kim JD, Ohta T, Okanohara D, Matsuzaki T, Tateisi Y, Tsujii J.

BMC Bioinformatics. 2008 Apr 11;9 Suppl 3:S5.PMID: 18426550 [PubMed - indexed for MEDLINE]Related articlesFree article

Issues in learning an ontology from text.

Brewster C, Jupp S, Luciano J, Shotton D, Stevens RD, Zhang Z.

BMC Bioinformatics. 2009 May 6;10 Suppl 5:S1.PMID: 19426458 [PubMed - indexed for MEDLINE]Related articlesFree article

Mining protein function from text using term-based support vector machines.

Rice SB, Nenadic G, Stapley BJ.

BMC Bioinformatics. 2005;6 Suppl 1:S22. Epub 2005 May 24.PMID: 15960835 [PubMed - indexed for MEDLINE]Related articlesFree article

Automatic recognition of topic-classified relations between prostate cancer and genes using MEDLINE abstracts.

Chun HW, Tsuruoka Y, Kim JD, Shiba R, Nagata N, Hishiki T, Tsujii J.

BMC Bioinformatics. 2006 Nov 24;7 Suppl 3:S4.PMID: 17134477 [PubMed - indexed for MEDLINE]Related articlesFree article

Automatic extraction of candidate nomenclature terms using the doublet method.

Berman JJ.

BMC Med Inform Decis Mak. 2005 Oct 18;5:35.PMID: 16232314 [PubMed - indexed for MEDLINE]Related articlesFree article

Ontology-based, Tissue MicroArray oriented, image centered tissue bank.

Viti F, Merelli I, Caprera A, Lazzari B, Stella A, Milanesi L.

BMC Bioinformatics. 2008 Apr 25;9 Suppl 4:S4.PMID: 18460177 [PubMed - indexed for MEDLINE]Related articlesFree article

What makes a gene name? Named entity recognition in the biomedical literature.

Leser U, Hakenberg J.

Brief Bioinform. 2005 Dec;6(4):357-69.PMID: 16420734 [PubMed - indexed for MEDLINE]Related articlesFree article

Biomedical word sense disambiguation with ontologies and metadata: automation meets accuracy.

Alexopoulou D, Andreopoulos B, Dietze H, Doms A, Gandon F, Hakenberg J, Khelif K, Schroeder M, Wächter T.

BMC Bioinformatics. 2009 Jan 21;10:28.PMID: 19159460 [PubMed - indexed for MEDLINE]Related articlesFree article

Towards ontology-driven navigation of the lipid bibliosphere.

Baker CJ, Kanagasabai R, Ang WT, Veeramani A, Low HS, Wenk MR.

BMC Bioinformatics. 2008;9 Suppl 1:S5.PMID: 18315858 [PubMed - indexed for MEDLINE]Related articlesFree article