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    Results: 1 to 20 of 129

    1.

    ISPIDER Central: an integrated database web-server for proteomics.

    Siepen JA, Belhajjame K, Selley JN, Embury SM, Paton NW, Goble CA, Oliver SG, Stevens R, Zamboulis L, Martin N, Poulovassillis A, Jones P, Côté R, Hermjakob H, Pentony MM, Jones DT, Orengo CA, Hubbard SJ.

    Nucleic Acids Res. 2008 Jul 1;36(Web Server issue):W485-90. Epub 2008 Apr 25.PMID: 18440977 [PubMed - indexed for MEDLINE]Related articlesFree article

    2.

    maxdLoad2 and maxdBrowse: standards-compliant tools for microarray experimental annotation, data management and dissemination.

    Hancock D, Wilson M, Velarde G, Morrison N, Hayes A, Hulme H, Wood AJ, Nashar K, Kell DB, Brass A.

    BMC Bioinformatics. 2005 Nov 3;6:264.PMID: 16269077 [PubMed - indexed for MEDLINE]Related articlesFree article

    3.

    The PRIDE proteomics identifications database: data submission, query, and dataset comparison.

    Jones P, Côté R.

    Methods Mol Biol. 2008;484:287-303.PMID: 18592187 [PubMed - indexed for MEDLINE]Related articles

    4.

    PRIDE: a public repository of protein and peptide identifications for the proteomics community.

    Jones P, Côté RG, Martens L, Quinn AF, Taylor CF, Derache W, Hermjakob H, Apweiler R.

    Nucleic Acids Res. 2006 Jan 1;34(Database issue):D659-63.PMID: 16381953 [PubMed - indexed for MEDLINE]Related articlesFree article

    5.

    Integrating protein annotation resources through the Distributed Annotation System.

    Olason PI.

    Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W468-70.PMID: 15980514 [PubMed - indexed for MEDLINE]Related articlesFree article

    6.

    The proteios software environment: an extensible multiuser platform for management and analysis of proteomics data.

    Häkkinen J, Vincic G, Månsson O, Wårell K, Levander F.

    J Proteome Res. 2009 Jun;8(6):3037-43.PMID: 19354269 [PubMed - indexed for MEDLINE]Related articles

    7.

    PepSeeker: a database of proteome peptide identifications for investigating fragmentation patterns.

    McLaughlin T, Siepen JA, Selley J, Lynch JA, Lau KW, Yin H, Gaskell SJ, Hubbard SJ.

    Nucleic Acids Res. 2006 Jan 1;34(Database issue):D649-54.PMID: 16381951 [PubMed - indexed for MEDLINE]Related articlesFree article

    8.

    MannDB - a microbial database of automated protein sequence analyses and evidence integration for protein characterization.

    Zhou CL, Lam MW, Smith JR, Zemla AT, Dyer MD, Kuczmarski TA, Vitalis EA, Slezak TR.

    BMC Bioinformatics. 2006 Oct 17;7:459.PMID: 17044936 [PubMed - indexed for MEDLINE]Related articlesFree article

    9.

    Prediction of missed cleavage sites in tryptic peptides aids protein identification in proteomics.

    Siepen JA, Keevil EJ, Knight D, Hubbard SJ.

    J Proteome Res. 2007 Jan;6(1):399-408.PMID: 17203985 [PubMed - indexed for MEDLINE]Related articlesFree article

    10.

    PRIDE: the proteomics identifications database.

    Martens L, Hermjakob H, Jones P, Adamski M, Taylor C, States D, Gevaert K, Vandekerckhove J, Apweiler R.

    Proteomics. 2005 Aug;5(13):3537-45. Erratum in: Proteomics. 2005 Oct;5(15):4046. PMID: 16041671 [PubMed - indexed for MEDLINE]Related articles

    11.

    Using the Proteomics Identifications Database (PRIDE).

    Martens L, Jones P, Côté R.

    Curr Protoc Bioinformatics. 2008 Mar;Chapter 13:Unit 13.8.PMID: 18428683 [PubMed - indexed for MEDLINE]Related articles

    12.

    Columba: an integrated database of proteins, structures, and annotations.

    Trissl S, Rother K, Müller H, Steinke T, Koch I, Preissner R, Frömmel C, Leser U.

    BMC Bioinformatics. 2005 Mar 31;6:81.PMID: 15801979 [PubMed - indexed for MEDLINE]Related articlesFree article

    13.

    Corra: Computational framework and tools for LC-MS discovery and targeted mass spectrometry-based proteomics.

    Brusniak MY, Bodenmiller B, Campbell D, Cooke K, Eddes J, Garbutt A, Lau H, Letarte S, Mueller LN, Sharma V, Vitek O, Zhang N, Aebersold R, Watts JD.

    BMC Bioinformatics. 2008 Dec 16;9:542.PMID: 19087345 [PubMed - indexed for MEDLINE]Related articlesFree article

    14.

    ExPASy: The proteomics server for in-depth protein knowledge and analysis.

    Gasteiger E, Gattiker A, Hoogland C, Ivanyi I, Appel RD, Bairoch A.

    Nucleic Acids Res. 2003 Jul 1;31(13):3784-8.PMID: 12824418 [PubMed - indexed for MEDLINE]Related articlesFree article

    15.

    MyHits: a new interactive resource for protein annotation and domain identification.

    Pagni M, Ioannidis V, Cerutti L, Zahn-Zabal M, Jongeneel CV, Falquet L.

    Nucleic Acids Res. 2004 Jul 1;32(Web Server issue):W332-5.PMID: 15215405 [PubMed - indexed for MEDLINE]Related articlesFree article

    16.

    2DB: a Proteomics database for storage, analysis, presentation, and retrieval of information from mass spectrometric experiments.

    Allmer J, Kuhlgert S, Hippler M.

    BMC Bioinformatics. 2008 Jul 7;9:302.PMID: 18605993 [PubMed - indexed for MEDLINE]Related articlesFree article

    17.

    Biosphere: the interoperation of web services in microarray cluster analysis.

    Cheung KH, de Knikker R, Guo Y, Zhong G, Hager J, Yip KY, Kwan AK, Li P, Cheung DW.

    Appl Bioinformatics. 2004;3(4):253-6.PMID: 15702956 [PubMed - indexed for MEDLINE]Related articles

    18.

    The PeptideAtlas project.

    Desiere F, Deutsch EW, King NL, Nesvizhskii AI, Mallick P, Eng J, Chen S, Eddes J, Loevenich SN, Aebersold R.

    Nucleic Acids Res. 2006 Jan 1;34(Database issue):D655-8.PMID: 16381952 [PubMed - indexed for MEDLINE]Related articlesFree article

    19.

    A comprehensive dictionary of protein accession codes for complete protein accession identifier alias resolving.

    Boehm AM, Sickmann A.

    Proteomics. 2006 Aug;6(15):4223-6.PMID: 16888720 [PubMed - indexed for MEDLINE]Related articles

    20.

    Construction of a nasopharyngeal carcinoma 2D/MS repository with Open Source XML database--Xindice.

    Li F, Li M, Xiao Z, Zhang P, Li J, Chen Z.

    BMC Bioinformatics. 2006 Jan 11;7:13.PMID: 16403238 [PubMed - indexed for MEDLINE]Related articlesFree article

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