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    Results: 1 to 20 of 998

    1.

    Phenotype prediction in regulated metabolic networks.

    Kaleta C, Centler F, di Fenizio PS, Dittrich P.

    BMC Syst Biol. 2008 Apr 25;2:37.PMID: 18439260 [PubMed - indexed for MEDLINE]Related articlesFree article

    2.

    Including metabolite concentrations into flux balance analysis: thermodynamic realizability as a constraint on flux distributions in metabolic networks.

    Hoppe A, Hoffmann S, Holzhütter HG.

    BMC Syst Biol. 2007 Jun 1;1:23.PMID: 17543097 [PubMed - indexed for MEDLINE]Related articlesFree article

    3.

    Discovering functional gene expression patterns in the metabolic network of Escherichia coli with wavelets transforms.

    König R, Schramm G, Oswald M, Seitz H, Sager S, Zapatka M, Reinelt G, Eils R.

    BMC Bioinformatics. 2006 Mar 8;7:119.PMID: 16524469 [PubMed - indexed for MEDLINE]Related articlesFree article

    4.

    Low degree metabolites explain essential reactions and enhance modularity in biological networks.

    Samal A, Singh S, Giri V, Krishna S, Raghuram N, Jain S.

    BMC Bioinformatics. 2006 Mar 8;7:118.PMID: 16524470 [PubMed - indexed for MEDLINE]Related articlesFree article

    5.

    A discrete mathematical model applied to genetic regulation and metabolic networks.

    Asenjo AJ, Ramirez P, Rapaport I, Aracena J, Goles E, Andrews BA.

    J Microbiol Biotechnol. 2007 Mar;17(3):496-510.PMID: 18050955 [PubMed - indexed for MEDLINE]Related articlesFree article

    6.

    Decomposition of metabolic network into functional modules based on the global connectivity structure of reaction graph.

    Ma HW, Zhao XM, Yuan YJ, Zeng AP.

    Bioinformatics. 2004 Aug 12;20(12):1870-6. Epub 2004 Mar 22.PMID: 15037506 [PubMed - indexed for MEDLINE]Related articlesFree article

    7.

    Identification of regulatory network topological units coordinating the genome-wide transcriptional response to glucose in Escherichia coli.

    Gutierrez-Ríos RM, Freyre-Gonzalez JA, Resendis O, Collado-Vides J, Saier M, Gosset G.

    BMC Microbiol. 2007 Jun 8;7:53.PMID: 17559662 [PubMed - indexed for MEDLINE]Related articlesFree article

    8.

    Reconstruction and analysis of the genetic and metabolic regulatory networks of the central metabolism of Bacillus subtilis.

    Goelzer A, Bekkal Brikci F, Martin-Verstraete I, Noirot P, Bessières P, Aymerich S, Fromion V.

    BMC Syst Biol. 2008 Feb 26;2:20.PMID: 18302748 [PubMed - indexed for MEDLINE]Related articlesFree article

    9.

    Estimating the size of the solution space of metabolic networks.

    Braunstein A, Mulet R, Pagnani A.

    BMC Bioinformatics. 2008 May 19;9:240.PMID: 18489757 [PubMed - indexed for MEDLINE]Related articlesFree article

    10.

    Integrating metabolic, transcriptional regulatory and signal transduction models in Escherichia coli.

    Covert MW, Xiao N, Chen TJ, Karr JR.

    Bioinformatics. 2008 Sep 15;24(18):2044-50. Epub 2008 Jul 10.PMID: 18621757 [PubMed - indexed for MEDLINE]Related articlesFree article

    11.

    SBMLsqueezer: a CellDesigner plug-in to generate kinetic rate equations for biochemical networks.

    Dräger A, Hassis N, Supper J, Schröder A, Zell A.

    BMC Syst Biol. 2008 Apr 30;2:39.PMID: 18447902 [PubMed - indexed for MEDLINE]Related articlesFree article

    12.

    Co-regulation of metabolic genes is better explained by flux coupling than by network distance.

    Notebaart RA, Teusink B, Siezen RJ, Papp B.

    PLoS Comput Biol. 2008 Jan;4(1):e26.PMID: 18225949 [PubMed - indexed for MEDLINE]Related articlesFree article

    13.

    Exploiting the pathway structure of metabolism to reveal high-order epistasis.

    Imielinski M, Belta C.

    BMC Syst Biol. 2008 Apr 30;2:40.PMID: 18447928 [PubMed - indexed for MEDLINE]Related articlesFree article

    14.

    Three factors underlying incorrect in silico predictions of essential metabolic genes.

    Becker SA, Palsson BO.

    BMC Syst Biol. 2008 Feb 4;2:14.PMID: 18248675 [PubMed - indexed for MEDLINE]Related articlesFree article

    15.

    Genome-scale in silico models of E. coli have multiple equivalent phenotypic states: assessment of correlated reaction subsets that comprise network states.

    Reed JL, Palsson BØ.

    Genome Res. 2004 Sep;14(9):1797-805.PMID: 15342562 [PubMed - indexed for MEDLINE]Related articlesFree article

    16.

    Metabolic network structure determines key aspects of functionality and regulation.

    Stelling J, Klamt S, Bettenbrock K, Schuster S, Gilles ED.

    Nature. 2002 Nov 14;420(6912):190-3.PMID: 12432396 [PubMed - indexed for MEDLINE]Related articles

    17.

    Predicting synthetic rescues in metabolic networks.

    Motter AE, Gulbahce N, Almaas E, Barabási AL.

    Mol Syst Biol. 2008;4:168. Epub 2008 Feb 12.PMID: 18277384 [PubMed - indexed for MEDLINE]Related articlesFree article

    18.

    Decomposing complex reaction networks using random sampling, principal component analysis and basis rotation.

    Barrett CL, Herrgard MJ, Palsson B.

    BMC Syst Biol. 2009 Mar 6;3:30.PMID: 19267928 [PubMed - indexed for MEDLINE]Related articlesFree article

    19.

    Network evaluation from the consistency of the graph structure with the measured data.

    Saito S, Aburatani S, Horimoto K.

    BMC Syst Biol. 2008 Oct 1;2:84.PMID: 18828895 [PubMed - indexed for MEDLINE]Related articlesFree article

    20.

    The global transcriptional regulatory network for metabolism in Escherichia coli exhibits few dominant functional states.

    Barrett CL, Herring CD, Reed JL, Palsson BO.

    Proc Natl Acad Sci U S A. 2005 Dec 27;102(52):19103-8. Epub 2005 Dec 15.PMID: 16357206 [PubMed - indexed for MEDLINE]Related articlesFree article

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