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Efficiency of the immunome protein interaction network increases during evolution.

Ortutay C, Vihinen M.

Immunome Res. 2008 Apr 22;4:4.PMID: 18430195 [PubMed - in process]Related articlesFree article

Protein evolution on a human signaling network.

Cui Q, Purisima EO, Wang E.

BMC Syst Biol. 2009 Feb 18;3:21.PMID: 19226461 [PubMed - indexed for MEDLINE]Related articlesFree article

Complex cooperative networks from evolutionary preferential attachment.

Poncela J, Gómez-Gardeñes J, Floría LM, Sánchez A, Moreno Y.

PLoS One. 2008 Jun 18;3(6):e2449.PMID: 18560601 [PubMed - indexed for MEDLINE]Related articlesFree article

The integrated analysis of metabolic and protein interaction networks reveals novel molecular organizing principles.

Durek P, Walther D.

BMC Syst Biol. 2008 Nov 25;2:100.PMID: 19032748 [PubMed - indexed for MEDLINE]Related articlesFree article

Immunome knowledge base (IKB): an integrated service for immunome research.

Ortutay C, Vihinen M.

BMC Immunol. 2009 Jan 9;10:3.PMID: 19134210 [PubMed - indexed for MEDLINE]Related articlesFree article

Evolution at the system level: the natural history of protein interaction networks.

Stumpf MP, Kelly WP, Thorne T, Wiuf C.

Trends Ecol Evol. 2007 Jul;22(7):366-73. Epub 2007 May 1. Review.PMID: 17475365 [PubMed - indexed for MEDLINE]Related articles

Geometric evolutionary dynamics of protein interaction networks.

Przulj N, Kuchaiev O, Stevanović A, Hayes W.

Pac Symp Biocomput. 2010:178-89.PMID: 19908370 [PubMed - in process]Related articlesFree article

Emergence of scale-free distribution in protein-protein interaction networks based on random selection of interacting domain pairs.

Nacher JC, Hayashida M, Akutsu T.

Biosystems. 2009 Feb;95(2):155-9. Epub 2008 Nov 1.PMID: 19010382 [PubMed - indexed for MEDLINE]Related articles

Immunome: a reference set of genes and proteins for systems biology of the human immune system.

Ortutay C, Vihinen M.

Cell Immunol. 2006 Dec;244(2):87-9. Epub 2007 Apr 16.PMID: 17434156 [PubMed - indexed for MEDLINE]Related articles

Structure of protein interaction networks and their implications on drug design.

Hase T, Tanaka H, Suzuki Y, Nakagawa S, Kitano H.

PLoS Comput Biol. 2009 Oct;5(10):e1000550. Epub 2009 Oct 30.PMID: 19876376 [PubMed - indexed for MEDLINE]Related articlesFree article

Natural selection governs local, but not global, evolutionary gene coexpression networks in Caenorhabditis elegans.

Jordan IK, Katz LS, Denver DR, Streelman JT.

BMC Syst Biol. 2008 Nov 13;2:96.PMID: 19014554 [PubMed - indexed for MEDLINE]Related articlesFree article

The topology of the bacterial co-conserved protein network and its implications for predicting protein function.

Karimpour-Fard A, Leach SM, Hunter LE, Gill RT.

BMC Genomics. 2008 Jun 30;9:313.PMID: 18590549 [PubMed - indexed for MEDLINE]Related articlesFree article

Molecular characterization of the immune system: emergence of proteins, processes, and domains.

Ortutay C, Siermala M, Vihinen M.

Immunogenetics. 2007 May;59(5):333-48. Epub 2007 Feb 9.PMID: 17294181 [PubMed - indexed for MEDLINE]Related articles

Age-dependent evolution of the yeast protein interaction network suggests a limited role of gene duplication and divergence.

Kim WK, Marcotte EM.

PLoS Comput Biol. 2008 Nov;4(11):e1000232. Epub 2008 Nov 28.PMID: 19043579 [PubMed - indexed for MEDLINE]Related articlesFree article

Unifying evolutionary and network dynamics.

Swarup S, Gasser L.

Phys Rev E Stat Nonlin Soft Matter Phys. 2007 Jun;75(6 Pt 2):066114. Epub 2007 Jun 28.PMID: 17677332 [PubMed]Related articles

Evolution of biomolecular networks: lessons from metabolic and protein interactions.

Yamada T, Bork P.

Nat Rev Mol Cell Biol. 2009 Nov;10(11):791-803. Review.PMID: 19851337 [PubMed - indexed for MEDLINE]Related articles

A paradigm for viewing biologic systems as scale-free networks based on energy efficiency: implications for present therapies and the future of evolution.

Yun AJ, Lee PY, Doux JD.

Med Hypotheses. 2006;67(3):651-7. Epub 2006 Apr 3.PMID: 16580786 [PubMed - indexed for MEDLINE]Related articles

Topological and organizational properties of the products of house-keeping and tissue-specific genes in protein-protein interaction networks.

Lin WH, Liu WC, Hwang MJ.

BMC Syst Biol. 2009 Mar 11;3:32.PMID: 19284572 [PubMed - indexed for MEDLINE]Related articlesFree article

Making the right connections: biological networks in the light of evolution.

Knight CG, Pinney JW.

Bioessays. 2009 Oct;31(10):1080-90.PMID: 19722181 [PubMed - indexed for MEDLINE]Related articles

Information flow analysis of interactome networks.

Missiuro PV, Liu K, Zou L, Ross BC, Zhao G, Liu JS, Ge H.

PLoS Comput Biol. 2009 Apr;5(4):e1000350. Epub 2009 Apr 10.PMID: 19503817 [PubMed - indexed for MEDLINE]Related articlesFree article