PubMed

Expression profiling with RNA from formalin-fixed, paraffin-embedded material.

Oberli A, Popovici V, Delorenzi M, Baltzer A, Antonov J, Matthey S, Aebi S, Altermatt HJ, Jaggi R.

BMC Med Genomics. 2008 Apr 19;1:9.PMID: 18423048 [PubMed]Related articlesFree article

Gene expression variation between distinct areas of breast cancer measured from paraffin-embedded tissue cores.

Schobesberger M, Baltzer A, Oberli A, Kappeler A, Gugger M, Burger H, Jaggi R.

BMC Cancer. 2008 Nov 25;8:343.PMID: 19032762 [PubMed - indexed for MEDLINE]Related articlesFree article

Microarray analysis of RNA extracted from formalin-fixed, paraffin-embedded and matched fresh-frozen ovarian adenocarcinomas.

Fedorowicz G, Guerrero S, Wu TD, Modrusan Z.

BMC Med Genomics. 2009 May 8;2:23.PMID: 19426511 [PubMed - in process]Related articlesFree article

Reliable gene expression measurements from degraded RNA by quantitative real-time PCR depend on short amplicons and a proper normalization.

Antonov J, Goldstein DR, Oberli A, Baltzer A, Pirotta M, Fleischmann A, Altermatt HJ, Jaggi R.

Lab Invest. 2005 Aug;85(8):1040-50.PMID: 15951835 [PubMed - indexed for MEDLINE]Related articlesFree article

Optimization of the method of RNA isolation from paraffin blocks to assess gene expression in breast cancer.

Jarzab M, Rózanowski P, Kowalska M, Zebracka J, Rudnicka L, Stobiecka E, Jarzab B, Stachura J, Pawlega J.

Pol J Pathol. 2008;59(2):85-91.PMID: 18669173 [PubMed - indexed for MEDLINE]Related articles

RNA expression analysis of formalin-fixed paraffin-embedded tumors.

Penland SK, Keku TO, Torrice C, He X, Krishnamurthy J, Hoadley KA, Woosley JT, Thomas NE, Perou CM, Sandler RS, Sharpless NE.

Lab Invest. 2007 Apr;87(4):383-91. Epub 2007 Feb 12.PMID: 17297435 [PubMed - indexed for MEDLINE]Related articlesFree article

Improved RNA quality and TaqMan Pre-amplification method (PreAmp) to enhance expression analysis from formalin fixed paraffin embedded (FFPE) materials.

Li J, Smyth P, Cahill S, Denning K, Flavin R, Aherne S, Pirotta M, Guenther SM, O'Leary JJ, Sheils O.

BMC Biotechnol. 2008 Feb 6;8:10.PMID: 18254955 [PubMed - indexed for MEDLINE]Related articlesFree article

Preliminary comparison of quantity, quality, and microarray performance of RNA extracted from formalin-fixed, paraffin-embedded, and unfixed frozen tissue samples.

Scicchitano MS, Dalmas DA, Bertiaux MA, Anderson SM, Turner LR, Thomas RA, Mirable R, Boyce RW.

J Histochem Cytochem. 2006 Nov;54(11):1229-37. Epub 2006 Jul 24.PMID: 16864893 [PubMed - indexed for MEDLINE]Related articlesFree article

Real-time quantitative RT-PCR shows variable, assay-dependent sensitivity to formalin fixation: implications for direct comparison of transcript levels in paraffin-embedded tissues.

Koch I, Slotta-Huspenina J, Hollweck R, Anastasov N, Hofler H, Quintanilla-Martinez L, Fend F.

Diagn Mol Pathol. 2006 Sep;15(3):149-56.PMID: 16932070 [PubMed - indexed for MEDLINE]Related articles

Identification of methods for use of formalin-fixed, paraffin-embedded tissue samples in RNA expression profiling.

Roberts L, Bowers J, Sensinger K, Lisowski A, Getts R, Anderson MG.

Genomics. 2009 Nov;94(5):341-8. Epub 2009 Aug 4.PMID: 19660539 [PubMed - in process]Related articles

Quantitative nuclease protection assay in paraffin-embedded tissue replicates prognostic microarray gene expression in diffuse large-B-cell lymphoma.

Roberts RA, Sabalos CM, LeBlanc ML, Martel RR, Frutiger YM, Unger JM, Botros IW, Rounseville MP, Seligmann BE, Miller TP, Grogan TM, Rimsza LM.

Lab Invest. 2007 Oct;87(10):979-97. Epub 2007 Aug 13.PMID: 17700562 [PubMed - indexed for MEDLINE]Related articlesFree article

Agreement in breast cancer classification between microarray and quantitative reverse transcription PCR from fresh-frozen and formalin-fixed, paraffin-embedded tissues.

Mullins M, Perreard L, Quackenbush JF, Gauthier N, Bayer S, Ellis M, Parker J, Perou CM, Szabo A, Bernard PS.

Clin Chem. 2007 Jul;53(7):1273-9. Epub 2007 May 24.PMID: 17525107 [PubMed - indexed for MEDLINE]Related articlesFree article

MicroRNA expression in melanocytic nevi: the usefulness of formalin-fixed, paraffin-embedded material for miRNA microarray profiling.

Glud M, Klausen M, Gniadecki R, Rossing M, Hastrup N, Nielsen FC, Drzewiecki KT.

J Invest Dermatol. 2009 May;129(5):1219-24. Epub 2008 Nov 13.PMID: 19005486 [PubMed - indexed for MEDLINE]Related articles

Optimized protocol for gene expression analysis in formalin-fixed, paraffin-embedded tissue using real-time quantitative polymerase chain reaction.

Votavova H, Forsterova K, Stritesky J, Velenska Z, Trneny M.

Diagn Mol Pathol. 2009 Sep;18(3):176-82.PMID: 19704263 [PubMed - indexed for MEDLINE]Related articles

Selection of REFERENCE genes for normalization of qRT-PCR data derived from FFPE breast tumors.

Drury S, Anderson H, Dowsett M.

Diagn Mol Pathol. 2009 Jun;18(2):103-7.PMID: 19430294 [PubMed - indexed for MEDLINE]Related articles

Global gene expression profiling of formalin-fixed paraffin-embedded tumor samples: a comparison to snap-frozen material using oligonucleotide microarrays.

Frank M, Döring C, Metzler D, Eckerle S, Hansmann ML.

Virchows Arch. 2007 Jun;450(6):699-711. Epub 2007 May 4.PMID: 17479285 [PubMed - indexed for MEDLINE]Related articles

Robust global micro-RNA profiling with formalin-fixed paraffin-embedded breast cancer tissues.

Hui AB, Shi W, Boutros PC, Miller N, Pintilie M, Fyles T, McCready D, Wong D, Gerster K, Waldron L, Jurisica I, Penn LZ, Liu FF.

Lab Invest. 2009 May;89(5):597-606. Epub 2009 Mar 16. Erratum in: Lab Invest. 2009 Jun;89(6):726. Waldron, Levi [added]. PMID: 19290006 [PubMed - indexed for MEDLINE]Related articles

Quantitative expression profiling of RNA from formalin-fixed, paraffin-embedded tissues using randomly assembled bead arrays.

Bibikova M, Yeakley JM, Wang-Rodriguez J, Fan JB.

Methods Mol Biol. 2008;439:159-77.PMID: 18370102 [PubMed - indexed for MEDLINE]Related articles

Quantitative expression profiling of highly degraded RNA from formalin-fixed, paraffin-embedded breast tumor biopsies by oligonucleotide microarrays.

Ravo M, Mutarelli M, Ferraro L, Grober OM, Paris O, Tarallo R, Vigilante A, Cimino D, De Bortoli M, Nola E, Cicatiello L, Weisz A.

Lab Invest. 2008 Apr;88(4):430-40. Epub 2008 Feb 25.PMID: 18305565 [PubMed - indexed for MEDLINE]Related articlesFree article

Reliability and reproducibility of a RNA preamplification method for low-density array analysis from formalin-fixed paraffin-embedded breast cancer samples.

Ciotti P, Garuti A, Ballestrero A, Cirmena G, Chiaramondia M, Baccini P, Bellone E, Mandich P.

Diagn Mol Pathol. 2009 Jun;18(2):112-8.PMID: 19430292 [PubMed - indexed for MEDLINE]Related articles