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    Results: 1 to 20 of 628

    1.

    A probe-treatment-reference (PTR) model for the analysis of oligonucleotide expression microarrays.

    Ge H, Cheng C, Li LM.

    BMC Bioinformatics. 2008 Apr 14;9:194.PMID: 18410691 [PubMed - indexed for MEDLINE]Related articlesFree article

    2.

    A summarization approach for Affymetrix GeneChip data using a reference training set from a large, biologically diverse database.

    Katz S, Irizarry RA, Lin X, Tripputi M, Porter MW.

    BMC Bioinformatics. 2006 Oct 23;7:464.PMID: 17059591 [PubMed - indexed for MEDLINE]Related articlesFree article

    3.

    Normalization for Affymetrix GeneChips.

    Boes T, Neuhäuser M.

    Methods Inf Med. 2005;44(3):414-7.PMID: 16113766 [PubMed - indexed for MEDLINE]Related articles

    4.

    Interactively optimizing signal-to-noise ratios in expression profiling: project-specific algorithm selection and detection p-value weighting in Affymetrix microarrays.

    Seo J, Bakay M, Chen YW, Hilmer S, Shneiderman B, Hoffman EP.

    Bioinformatics. 2004 Nov 1;20(16):2534-44. Epub 2004 Apr 29.PMID: 15117752 [PubMed - indexed for MEDLINE]Related articlesFree article

    5.

    Noise sampling method: an ANOVA approach allowing robust selection of differentially regulated genes measured by DNA microarrays.

    Draghici S, Kulaeva O, Hoff B, Petrov A, Shams S, Tainsky MA.

    Bioinformatics. 2003 Jul 22;19(11):1348-59.PMID: 12874046 [PubMed - indexed for MEDLINE]Related articlesFree article

    6.

    A new summarization method for Affymetrix probe level data.

    Hochreiter S, Clevert DA, Obermayer K.

    Bioinformatics. 2006 Apr 15;22(8):943-9. Epub 2006 Feb 10.PMID: 16473874 [PubMed - indexed for MEDLINE]Related articlesFree article

    7.

    Empirical Bayes models for multiple probe type microarrays at the probe level.

    Astrand M, Mostad P, Rudemo M.

    BMC Bioinformatics. 2008 Mar 20;9:156.PMID: 18366694 [PubMed - indexed for MEDLINE]Related articlesFree article

    8.

    Normalization of oligonucleotide arrays based on the least-variant set of genes.

    Calza S, Valentini D, Pawitan Y.

    BMC Bioinformatics. 2008 Mar 5;9:140.PMID: 18318917 [PubMed - indexed for MEDLINE]Related articlesFree article

    9.

    Gene selection for oligonucleotide array: an approach using PM probe level data.

    Chen DT, Lin SH, Soong SJ.

    Bioinformatics. 2004 Apr 12;20(6):854-62. Epub 2004 Jan 29.PMID: 14752002 [PubMed - indexed for MEDLINE]Related articlesFree article

    10.

    Assessing the need for sequence-based normalization in tiling microarray experiments.

    Royce TE, Rozowsky JS, Gerstein MB.

    Bioinformatics. 2007 Apr 15;23(8):988-97. Epub 2007 Mar 25.PMID: 17387113 [PubMed - indexed for MEDLINE]Related articlesFree article

    11.

    Effect of various normalization methods on Applied Biosystems expression array system data.

    Barbacioru CC, Wang Y, Canales RD, Sun YA, Keys DN, Chan F, Poulter KA, Samaha RR.

    BMC Bioinformatics. 2006 Dec 15;7:533.PMID: 17173684 [PubMed - indexed for MEDLINE]Related articlesFree article

    12.

    Methodological study of affine transformations of gene expression data with proposed robust non-parametric multi-dimensional normalization method.

    Bengtsson H, Hössjer O.

    BMC Bioinformatics. 2006 Mar 1;7:100.PMID: 16509971 [PubMed - indexed for MEDLINE]Related articlesFree article

    13.

    New normalization methods for cDNA microarray data.

    Wilson DL, Buckley MJ, Helliwell CA, Wilson IW.

    Bioinformatics. 2003 Jul 22;19(11):1325-32.PMID: 12874043 [PubMed - indexed for MEDLINE]Related articlesFree article

    14.

    Transcript-level annotation of Affymetrix probesets improves the interpretation of gene expression data.

    Yu H, Wang F, Tu K, Xie L, Li YY, Li YX.

    BMC Bioinformatics. 2007 Jun 11;8:194.PMID: 17559689 [PubMed - indexed for MEDLINE]Related articlesFree article

    15.

    An expression index for Affymetrix GeneChips based on the generalized logarithm.

    Zhou L, Rocke DM.

    Bioinformatics. 2005 Nov 1;21(21):3983-9. Epub 2005 Sep 13.PMID: 16159924 [PubMed - indexed for MEDLINE]Related articlesFree article

    16.

    Selection of long oligonucleotides for gene expression microarrays using weighted rank-sum strategy.

    Hu G, Llinás M, Li J, Preiser PR, Bozdech Z.

    BMC Bioinformatics. 2007 Sep 19;8:350.PMID: 17880708 [PubMed - indexed for MEDLINE]Related articlesFree article

    17.

    Probe rank approaches for gene selection in oligonucleotide arrays with a small number of replicates.

    Chen DT, Chen JJ, Soong SJ.

    Bioinformatics. 2005 Jun 15;21(12):2861-6. Epub 2005 Apr 6.PMID: 15814562 [PubMed - indexed for MEDLINE]Related articlesFree article

    18.

    Identifying differentially expressed genes from microarray experiments via statistic synthesis.

    Yang YH, Xiao Y, Segal MR.

    Bioinformatics. 2005 Apr 1;21(7):1084-93. Epub 2004 Oct 28.PMID: 15513985 [PubMed - indexed for MEDLINE]Related articlesFree article

    19.

    A robust two-way semi-linear model for normalization of cDNA microarray data.

    Wang D, Huang J, Xie H, Manzella L, Soares MB.

    BMC Bioinformatics. 2005 Jan 21;6:14.PMID: 15663789 [PubMed - indexed for MEDLINE]Related articlesFree article

    20.

    A statistical method for predicting splice variants between two groups of samples using GeneChip expression array data.

    Fan W, Khalid N, Hallahan AR, Olson JM, Zhao LP.

    Theor Biol Med Model. 2006 Apr 7;3:19.PMID: 16603076 [PubMed - indexed for MEDLINE]Related articlesFree article

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